Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08650 - ( GTP-binding protein LepA putative )

16 Proteins interacs with AT5G08650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.1205

Class C:

plastid

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G17170

Predicted

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FSW = 0.0643

Class C:

plastid

RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G44890

Predicted

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FSW = 0.0514

Class C:

plastid

RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13120

Predicted

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FSW = 0.0677

Class C:

plastid

30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT5G13650

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.1404

Class C:

plastid

ELONGATION FACTOR FAMILY PROTEIN
AT1G78630

Predicted

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FSW = 0.0963

Class C:

plastid

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00160Predicted

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FSW = 0.0535

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00810Predicted

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FSW = 0.0346

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.0590

Class C:

plastid

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT1G50510

Predicted

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FSW = 0.0766

Unknown

INDIGOIDINE SYNTHASE A FAMILY PROTEIN
AT2G20060

Predicted

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FSW = 0.1432

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT4G37670

Predicted

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FSW = 0.1203

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN / AMINO ACID KINASE FAMILY PROTEIN
AT5G23535

Predicted

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FSW = 0.0692

Unknown

KOW DOMAIN-CONTAINING PROTEIN
AT5G39900

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0561

Unknown

GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR
AT1G71490

Predicted

Gene fusion method

FSW = 0.0775

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G22410

Predicted

Gene fusion method

FSW = 0.1113

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454