Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT2G33800 - ( ribosomal protein S5 family protein )

76 Proteins interacs with AT2G33800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36990

Predicted

pull down

FSW = 0.2733

Class C:

plastid

nucleus

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT3G63490

Predicted

pull down

FSW = 0.3758

Class C:

plastid

nucleus

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT5G41790

Predicted

pull down

FSW = 0.2149

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G48420

Predicted

pull down

FSW = 0.1556

Class C:

plastid

 D-CDES (D-CYSTEINE DESULFHYDRASE) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE/ D-CYSTEINE DESULFHYDRASE/ CATALYTIC
AT4G31210Predicted

pull down

FSW = 0.2086

Class C:

plastid

 DNA TOPOISOMERASE FAMILY PROTEIN
AT3G10690

Predicted

pull down

FSW = 0.1299

Class C:

plastid

 DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT2G04842

Predicted

pull down

FSW = 0.2154

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT2G25840

Predicted

pull down

FSW = 0.1373

Class C:

plastid

 OVA4 (OVULE ABORTION 4) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TRYPTOPHAN-TRNA LIGASE
AT4G30690

Predicted

pull down

FSW = 0.3158

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT4G34620

Predicted

pull down

FSW = 0.3469

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G19870

Predicted

pull down

FSW = 0.1158

Class C:

plastid

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G04270

Predicted

pull down

FSW = 0.3273

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT3G17170

Predicted

pull down

FSW = 0.3173

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G31860

Predicted

pull down

FSW = 0.0643

Class C:

plastid

 AT-IE PHOSPHORIBOSYL-AMP CYCLOHYDROLASE/ PHOSPHORIBOSYL-ATP DIPHOSPHATASE
AT1G48350

Predicted

pull down

FSW = 0.2683

Class C:

plastid

 RIBOSOMAL PROTEIN L18 FAMILY PROTEIN
AT2G22360

Predicted

pull down

FSW = 0.2963

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G25830

Predicted

pull down

FSW = 0.1111

Class C:

plastid

 YEBC-RELATED
AT5G66470

Predicted

pull down

FSW = 0.2200

Class C:

plastid

 GTP BINDING / RNA BINDING
AT3G13120

Predicted

pull down

FSW = 0.3918

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT5G14320

Predicted

pull down

FSW = 0.2917

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT2G22230

Predicted

pull down

FSW = 0.2860

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G17220

Predicted

pull down

FSW = 0.1115

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT3G03710

Predicted

pull down

FSW = 0.2733

Class C:

plastid

 RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
AT3G18680

Predicted

pull down

FSW = 0.2675

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT5G08650

Predicted

pull down

FSW = 0.1205

Class C:

plastid

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT5G55220

Predicted

pull down

FSW = 0.1788

Class C:

plastid

 TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT5G55280

Predicted

pull down

FSW = 0.0707

Class C:

plastid

 FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G30510

Predicted

pull down

FSW = 0.3492

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

pull down

FSW = 0.4479

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G03940

Predicted

pull down

FSW = 0.1314

Class C:

plastid

 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
AT2G43030

Predicted

pull down

FSW = 0.2917

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT4G02260

Predicted

pull down

FSW = 0.4248

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

pull down

FSW = 0.2989

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

pull down

FSW = 0.2120

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00330Predicted

pull down

FSW = 0.3750

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S14
ATCG00740Predicted

pull down

FSW = 0.4231

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00160Predicted

pull down

FSW = 0.4256

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

pull down

FSW = 0.5018

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00770Predicted

pull down

FSW = 0.1434

Class C:

plastid

 CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
ATCG00800Predicted

pull down

FSW = 0.5004

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00820Predicted

pull down

FSW = 0.2971

Class C:

plastid

 ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT
ATCG00830Predicted

pull down

FSW = 0.3623

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

pull down

FSW = 0.5359

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT2G36530

Predicted

pull down

FSW = 0.0251

Class C:

nucleus

 LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT3G09210

Predicted

pull down

FSW = 0.3070

Class C:

nucleus

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G38680

Predicted

pull down

FSW = 0.3641

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT4G02580

Predicted

pull down

FSW = 0.0416

Unknown

 NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE
AT4G02930

Predicted

pull down

FSW = 0.2095

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

pull down

FSW = 0.3299

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10370

Predicted

pull down

FSW = 0.0271

Unknown

 SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT4G11120

Predicted

pull down

FSW = 0.0443

Unknown

 TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE
AT5G04130

Predicted

pull down

FSW = 0.0912

Unknown

 DNA TOPOISOMERASE ATP-HYDROLYZING PUTATIVE / DNA TOPOISOMERASE II PUTATIVE / DNA GYRASE PUTATIVE
AT2G45240

Predicted

pull down

FSW = 0.1142

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT1G79500

Predicted

pull down

FSW = 0.2411

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT2G18230

Predicted

pull down

FSW = 0.1149

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G71790

Predicted

two hybrid

FSW = 0.0032

Unknown

 F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G32490

Predicted

pull down

FSW = 0.2209

Unknown

 ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G56350

Predicted

pull down

FSW = 0.0871

Unknown

 PEPTIDE CHAIN RELEASE FACTOR PUTATIVE
AT2G17510

Predicted

pull down

FSW = 0.2748

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G20060

Predicted

pull down

FSW = 0.5398

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G22310

Predicted

pull down

FSW = 0.4901

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G14140

Predicted

pull down

FSW = 0.2200

Unknown

 DMT2 (DNA METHYLTRANSFERASE 2) DNA (CYTOSINE-5-)-METHYLTRANSFERASE/ DNA BINDING / PROTEIN BINDING
AT4G21220

Predicted

pull down

FSW = 0.2946

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G25730

Predicted

pull down

FSW = 0.1170

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G26780

Predicted

pull down

FSW = 0.1078

Unknown

 AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT4G31150

Predicted

pull down

FSW = 0.1570

Unknown

 ENDONUCLEASE V FAMILY PROTEIN
AT4G31870

Predicted

pull down

FSW = 0.0789

Unknown

 ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE
AT4G36020

Predicted

pull down

FSW = 0.2314

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G37530

Predicted

pull down

FSW = 0.0654

Unknown

 THIF FAMILY PROTEIN
AT5G44680

Predicted

pull down

FSW = 0.0123

Unknown

 METHYLADENINE GLYCOSYLASE FAMILY PROTEIN
AT5G51140

Predicted

pull down

FSW = 0.3841

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G67520

Predicted

pull down

FSW = 0.0125

Unknown

 ADENYLYLSULFATE KINASE PUTATIVE
AT3G49080

Predicted

pull down

FSW = 0.3514

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G64650

Predicted

pull down

FSW = 0.3125

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
ATCG01230Predicted

pull down

FSW = 0.1999

Unknown

 CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0118

Unknown

 DEAD/DEAH BOX HELICASE PUTATIVE (RH16)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 1.154 seconds to be build.