Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13120 - ( 30S ribosomal protein S10 chloroplast putative )

40 Proteins interacs with AT3G13120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

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FSW = 0.0704

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G33800

Predicted

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FSW = 0.3918

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G31210Predicted

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FSW = 0.1685

Class C:

plastid

 DNA TOPOISOMERASE FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.0494

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT2G04842

Predicted

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FSW = 0.0282

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT3G13490

Predicted

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FSW = 0.0713

Class C:

plastid

 OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G30690

Predicted

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FSW = 0.0356

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G19870

Predicted

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FSW = 0.0390

Class C:

plastid

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.0557

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT2G05990

Predicted

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FSW = 0.0620

Class C:

plastid

 MOD1 (MOSAIC DEATH 1) ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (NADH)/ ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE/ OXIDOREDUCTASE
AT2G22360

Predicted

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FSW = 0.1452

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G18440

Predicted

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FSW = 0.0455

Class C:

plastid

 PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT1G63970

Predicted

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FSW = 0.0744

Class C:

plastid

 ISPF 2-C-METHYL-D-ERYTHRITOL 24-CYCLODIPHOSPHATE SYNTHASE
AT3G18680

Predicted

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FSW = 0.0572

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT3G29430

Predicted

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FSW = 0.0186

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT4G04350

Predicted

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FSW = 0.0547

Class C:

plastid

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G08650

Predicted

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FSW = 0.0677

Class C:

plastid

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT5G15450

Predicted

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FSW = 0.0094

Class C:

plastid

 CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G55280

Predicted

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FSW = 0.0282

Class C:

plastid

 FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT4G02260

Predicted

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FSW = 0.0888

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

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FSW = 0.2693

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

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FSW = 0.2051

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

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FSW = 0.1874

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
AT4G38680

Predicted

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FSW = 0.1307

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT3G09210

Predicted

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FSW = 0.1961

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G11060

Predicted

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FSW = 0.1493

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT2G45240

Predicted

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FSW = 0.1021

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT2G18230

Predicted

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FSW = 0.0329

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G79500

Predicted

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FSW = 0.0374

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT1G56350

Predicted

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FSW = 0.1094

Unknown

 PEPTIDE CHAIN RELEASE FACTOR PUTATIVE
AT1G76050

Predicted

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FSW = 0.0338

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT2G20060

Predicted

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FSW = 0.3678

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT2G39140

Predicted

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FSW = 0.0233

Unknown

 SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE
AT3G22310

Predicted

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FSW = 0.1501

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G21220

Predicted

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FSW = 0.0950

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G26860

Predicted

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FSW = 0.0229

Unknown

 PYRIDOXAL PHOSPHATE BINDING
AT4G29540

Predicted

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FSW = 0.0315

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G36020

Predicted

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FSW = 0.0967

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G10910

Predicted

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FSW = 0.0216

Unknown

 MRAW METHYLASE FAMILY PROTEIN
AT5G63120

Predicted

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FSW = 0.1964

Unknown

 ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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