Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36020 - ( CSDP1 (cold shock domain protein 1) RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding )
45 Proteins interacs with AT4G36020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G69620 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | RPL34 (RIBOSOMAL PROTEIN L34) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G41700 | Predictedpull down | FSW = 0.1224
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT2G32080 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | PUR ALPHA-1 NUCLEIC ACID BINDING |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT2G33800 | Predictedpull down | FSW = 0.2314
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G63490 | Predictedpull down | FSW = 0.1241
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT1G15700 | Predictedpull down | FSW = 0.0370
| Unknown | ATPC2 ENZYME REGULATOR |
AT1G48350 | Predictedpull down | FSW = 0.2061
| Unknown | RIBOSOMAL PROTEIN L18 FAMILY PROTEIN |
AT3G13120 | Predictedpull down | FSW = 0.0967
| Unknown | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
AT3G27850 | Predictedpull down | FSW = 0.0417
| Unknown | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0085
| Unknown | ATHM1 ENZYME ACTIVATOR |
AT2G38040 | Predictedpull down | FSW = 0.1108
| Unknown | CAC3 ACETYL-COA CARBOXYLASE |
AT1G24240 | Predictedpull down | FSW = 0.0804
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT2G43030 | Predictedpull down | FSW = 0.0832
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G15560 | Predictedpull down | FSW = 0.0303
| Unknown | CLA1 (CLOROPLASTOS ALTERADOS 1) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE |
ATCG00180 | Predictedpull down | FSW = 0.2262
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00190 | Predictedpull down | FSW = 0.2122
| Unknown | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
ATCG00330 | Predictedpull down | FSW = 0.1931
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S14 |
ATCG00380 | Predictedpull down | FSW = 0.1756
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00740 | Predictedpull down | FSW = 0.2913
| Unknown | RNA POLYMERASE ALPHA SUBUNIT |
ATCG00800 | Predictedpull down | FSW = 0.1591
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00830 | Predictedpull down | FSW = 0.1570
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.1348
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G25280 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
AT5G61170 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19C) |
AT1G04290 | Predictedtwo hybridtwo hybrid | FSW = 0.0278
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G61380 | Predictedpull down | FSW = 0.0253
| Unknown | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G00830 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G16870 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29-RELATED |
AT3G22660 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20060 | Predictedpull down | FSW = 0.1757
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G22310 | Predictedpull down | FSW = 0.2935
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT3G49080 | Predictedpull down | FSW = 0.0893
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT5G51140 | Predictedpull down | FSW = 0.3673
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G64650 | Predictedpull down | FSW = 0.1815
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | Predictedpull down | FSW = 0.0752
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT1G07070 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
AT1G52930 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G10810 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ATER |
AT2G47900 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | ATTLP3 (TUBBY LIKE PROTEIN 3) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
AT5G64730 | PredictedGene fusion method | FSW = 0.0370
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454