Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G52930 - ( brix domain-containing protein )

44 Proteins interacs with AT1G52930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25520

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3318

Unknown

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G47610

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1711

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G43170

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3008

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5429

Unknown

RIBOSOMAL PROTEIN-RELATED
AT3G01610

Predicted

Affinity Capture-MS

FSW = 0.3165

Unknown

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2357

Unknown

RNA BINDING
AT2G39460

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1818

Unknown

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3953

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G63810

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0493

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT2G44860

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2365

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3201

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4892

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2981

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.3230

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3550

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4571

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16810

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.4792

Unknown

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G07050

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.4761

Unknown

GTP-BINDING FAMILY PROTEIN
AT2G19385

Predicted

Affinity Capture-MS

FSW = 0.0856

Unknown

ZINC ION BINDING
AT3G18600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3571

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15550

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.5018

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3846

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT4G36020

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2364

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G09670

Predicted

Affinity Capture-MS

FSW = 0.1508

Unknown

PWWP DOMAIN-CONTAINING PROTEIN
AT4G18900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0966

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G10530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0303

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G10730

Predicted

Affinity Capture-MS

FSW = 0.1208

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3664

Unknown

PESCADILLO-RELATED
AT1G15440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0130

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G15770

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.4053

Unknown

RNA BINDING / PROTEIN BINDING
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4279

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G18220

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.5818

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.2173

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G04480Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1347

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G77050Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3150

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G79150

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3958

Unknown

BINDING
AT4G01560

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.5127

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT1G29965

Predicted

Affinity Capture-MS

FSW = 0.2998

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT1G25260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1928

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT4G16630

Predicted

Affinity Capture-MS

FSW = 0.4383

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT3G48960

Predicted

Affinity Capture-MS

FSW = 0.0526

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G16350

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0139

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT5G61770

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2861

Unknown

PPAN (PETER PAN-LIKE PROTEIN)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454