Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G52930 - ( brix domain-containing protein )
44 Proteins interacs with AT1G52930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3318
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G47610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1711
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3008
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5429
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G01610 | PredictedAffinity Capture-MS | FSW = 0.3165
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2357
| Unknown | RNA BINDING |
AT2G39460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1818
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3953
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G63810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0493
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT2G44860 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2365
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3201
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4892
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2981
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.3230
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3550
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4571
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4792
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT3G07050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4761
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | ZINC ION BINDING |
AT3G18600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3571
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5018
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3846
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT4G36020 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2364
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G09670 | PredictedAffinity Capture-MS | FSW = 0.1508
| Unknown | PWWP DOMAIN-CONTAINING PROTEIN |
AT4G18900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0966
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G10530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0303
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.1208
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3664
| Unknown | PESCADILLO-RELATED |
AT1G15440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0130
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4053
| Unknown | RNA BINDING / PROTEIN BINDING |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4279
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G18220 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5818
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.2173
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G04480 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1347
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G77050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3150
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G79150 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3958
| Unknown | BINDING |
AT4G01560 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5127
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.2998
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G25260 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1928
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.4383
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT3G48960 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT1G16350 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0139
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT5G61770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2861
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454