Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79150 - ( binding )
50 Proteins interacs with AT1G79150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.2601
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2963
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G43940 | PredictedAffinity Capture-MS | FSW = 0.0902
| Unknown | HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE |
AT3G01610 | PredictedAffinity Capture-MS | FSW = 0.3844
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.3201
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0297
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G04820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0465
| Unknown | PSEUDOURIDINE SYNTHASE |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4007
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3241
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G26600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2109
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3948
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G44900 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.0638
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0531
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3602
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G72440 | Predictedco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-MSCo-expression | FSW = 0.3447
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4802
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.2003
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G16810 | PredictedAffinity Capture-MS | FSW = 0.4630
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4892
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3938
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G37990 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2615
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4656
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.4007
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.2580
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0662
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G78580 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.2832
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT2G07690 | Predictedinterologs mappinginterologs mappingAffinity Capture-WesternCo-expression | FSW = 0.0253
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G18220 | PredictedSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6169
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4051
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G01560 | PredictedAffinity Capture-MS | FSW = 0.5420
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.5698
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6107
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3870
| Unknown | PESCADILLO-RELATED |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.2350
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G12620 | PredictedAffinity Capture-Western | FSW = 0.0994
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G15770 | PredictedAffinity Capture-MS | FSW = 0.4301
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.3666
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.3917
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G16980 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0446
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0933
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1203
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G52930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3958
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0817
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454