Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04600 - ( RNA recognition motif (RRM)-containing protein )
126 Proteins interacs with AT5G04600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.1623
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1206
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.1742
| Class C:nucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2841
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G47610 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3437
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2269
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G43170 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1786
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G22440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3399
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.2074
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0772
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G01610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2698
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.3551
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G05560 | PredictedAffinity Capture-MS | FSW = 0.0161
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3255
| Class C:nucleus | RNA BINDING |
AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.0912
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.2176
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.2860
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.1909
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0181
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2551
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.3069
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5464
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3543
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G23290 | PredictedAffinity Capture-MS | FSW = 0.0790
| Class C:nucleus | RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4758
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.2062
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G08180 | PredictedAffinity Capture-MS | FSW = 0.1460
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4925
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT1G48920 | PredictedAffinity Capture-MS | FSW = 0.0486
| Class C:nucleus | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G16810 | PredictedAffinity Capture-MS | FSW = 0.5078
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4714
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT5G05210 | PredictedAffinity Capture-MS | FSW = 0.1123
| Class C:nucleus | NUCLEOLAR MATRIX PROTEIN-RELATED |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.1911
| Class C:nucleus | UNKNOWN PROTEIN |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3399
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
AT3G05060 | PredictedAffinity Capture-MS | FSW = 0.2257
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.2274
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.2980
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT2G37990 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1601
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT4G05410 | PredictedAffinity Capture-MS | FSW = 0.1728
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0093
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G66540 | PredictedAffinity Capture-MS | FSW = 0.2223
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT3G18600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2184
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G20490 | PredictedAffinity Capture-MS | FSW = 0.0541
| Class C:nucleus | NOP10 RNA BINDING |
AT2G41840 | PredictedAffinity Capture-MS | FSW = 0.0611
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
AT1G63780 | PredictedAffinity Capture-MS | FSW = 0.0779
| Class C:nucleus | IMP4 |
AT4G22380 | PredictedAffinity Capture-MS | FSW = 0.0664
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3718
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.1700
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.2232
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0942
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.2143
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.4154
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4266
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G06530 | PredictedAffinity Capture-MS | FSW = 0.2656
| Unknown | BINDING |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0863
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G12110 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2549
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G70600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2891
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.1509
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT1G74270 | PredictedAffinity Capture-MS | FSW = 0.0885
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
AT4G15000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1997
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G19740 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0730
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31A) |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3706
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0637
| Unknown | BINDING |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.1131
| Unknown | GLYCINE-RICH PROTEIN |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.2241
| Unknown | UNKNOWN PROTEIN |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4827
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3536
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4514
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2205
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2765
| Unknown | SDA1 FAMILY PROTEIN |
AT1G23280 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | MAK16 PROTEIN-RELATED |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2274
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G31660 | PredictedAffinity Capture-MS | FSW = 0.1715
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G59760 | PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G69070 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.2136
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT1G75660 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3241
| Unknown | BINDING |
AT2G17250 | PredictedAffinity Capture-MS | FSW = 0.2149
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4915
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4489
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3458
| Unknown | BINDING |
AT2G40430 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1596
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT2G47420 | PredictedAffinity Capture-MS | FSW = 0.0835
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G13230 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | RNA BINDING |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3973
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.2637
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G55170 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT3G55280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3716
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4442
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G02400 | PredictedAffinity Capture-MS | FSW = 0.0570
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK) |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3596
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4213
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G25730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1655
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G28450 | PredictedAffinity Capture-MS | FSW = 0.1814
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2209
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.2712
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G03850 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28B) |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2453
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0130
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0228
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3889
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2455
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4470
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3534
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G57160 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0797
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4893
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.2345
| Unknown | RNA BINDING |
AT5G15750 | PredictedAffinity Capture-MS | FSW = 0.1490
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT5G30495 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK) |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.2829
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G59980 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | RNASE P SUBUNIT P30 FAMILY PROTEIN |
AT5G61770 | PredictedAffinity Capture-MS | FSW = 0.3220
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G21140 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | EMB1379 (EMBRYO DEFECTIVE 1379) |
AT1G52930 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3201
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1305
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.1954
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.1460
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1130
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G01960 | PredictedSynthetic Lethality | FSW = 0.0309
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454