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AT5G04600 - ( RNA recognition motif (RRM)-containing protein )

126 Proteins interacs with AT5G04600

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.1623	Class C: nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.1206	Class C: nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.1742	Class C: nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2841	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G47610	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3437	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2269	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G43170	Predicted Affinity Capture-MS Co-expression	FSW = 0.1786	Class C: nucleus	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3399	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2074	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G03920	Predicted Affinity Capture-MS	FSW = 0.0772	Class C: nucleus	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G01610	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2698	Class C: nucleus	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.3551	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G05560	Predicted Affinity Capture-MS	FSW = 0.0161	Class C: nucleus	60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3255	Class C: nucleus	RNA BINDING
AT2G33370	Predicted Affinity Capture-MS	FSW = 0.0912	Class C: nucleus	60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.2176	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.2860	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.1909	Class C: nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT4G16830	Predicted Affinity Capture-MS	FSW = 0.0181	Class C: nucleus	NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT2G44860	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2551	Class C: nucleus	60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.3069	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3080	Class C: nucleus	GTP-BINDING PROTEIN-RELATED
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.5464	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G55620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3543	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G23290	Predicted Affinity Capture-MS	FSW = 0.0790	Class C: nucleus	RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G23620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4758	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT3G57150	Predicted Affinity Capture-MS	FSW = 0.2062	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT5G08180	Predicted Affinity Capture-MS	FSW = 0.1460	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G72440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4925	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G48920	Predicted Affinity Capture-MS	FSW = 0.0486	Class C: nucleus	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G16810	Predicted Affinity Capture-MS	FSW = 0.5078	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4714	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT5G05210	Predicted Affinity Capture-MS	FSW = 0.1123	Class C: nucleus	NUCLEOLAR MATRIX PROTEIN-RELATED
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.1911	Class C: nucleus	UNKNOWN PROTEIN
AT3G07050	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3399	Class C: nucleus	GTP-BINDING FAMILY PROTEIN
AT3G05060	Predicted Affinity Capture-MS	FSW = 0.2257	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.2274	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.2980	Class C: nucleus	RNA HELICASE PUTATIVE
AT2G37990	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1601	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT4G05410	Predicted Affinity Capture-MS	FSW = 0.1728	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25340	Predicted Affinity Capture-MS	FSW = 0.0093	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G66540	Predicted Affinity Capture-MS	FSW = 0.2223	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT3G18600	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2184	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G20490	Predicted Affinity Capture-MS	FSW = 0.0541	Class C: nucleus	NOP10 RNA BINDING
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.0611	Class C: nucleus	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT1G63780	Predicted Affinity Capture-MS	FSW = 0.0779	Class C: nucleus	IMP4
AT4G22380	Predicted Affinity Capture-MS	FSW = 0.0664	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G15550	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3718	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.0062	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.1700	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.2232	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT4G18730	Predicted Affinity Capture-MS	FSW = 0.0942	Unknown	RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.2143	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4154	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4266	Unknown	RIBOSOMAL PROTEIN-RELATED
AT3G06530	Predicted Affinity Capture-MS	FSW = 0.2656	Unknown	BINDING
AT1G67120	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0863	Unknown	ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT3G12110	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640	Predicted two hybrid	FSW = 0.0207	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.2549	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G70600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2891	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.1509	Unknown	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.0885	Unknown	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G15000	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1997	Unknown	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT2G19740	Predicted Affinity Capture-MS Co-expression	FSW = 0.0730	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31A)
AT2G40360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3706	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30990	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0637	Unknown	BINDING
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.1131	Unknown	GLYCINE-RICH PROTEIN
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.2241	Unknown	UNKNOWN PROTEIN
AT1G50920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4827	Unknown	GTP-BINDING PROTEIN-RELATED
AT3G22660	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3536	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4514	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2205	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G13160	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2765	Unknown	SDA1 FAMILY PROTEIN
AT1G23280	Predicted Affinity Capture-MS	FSW = 0.0914	Unknown	MAK16 PROTEIN-RELATED
AT1G25260	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2274	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G31660	Predicted Affinity Capture-MS	FSW = 0.1715	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0894	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G69070	Predicted Affinity Capture-MS	FSW = 0.2319	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.2136	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT1G75660	Predicted Affinity Capture-MS	FSW = 0.0163	Unknown	XRN3 5-3 EXORIBONUCLEASE
AT1G79150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3241	Unknown	BINDING
AT2G17250	Predicted Affinity Capture-MS	FSW = 0.2149	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G18220	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.4915	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4489	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3458	Unknown	BINDING
AT2G40430	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1596	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT2G47420	Predicted Affinity Capture-MS	FSW = 0.0835	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G13230	Predicted Affinity Capture-MS	FSW = 0.0768	Unknown	RNA BINDING
AT3G15460	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3973	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.2637	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3176	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G55170	Predicted Affinity Capture-MS	FSW = 0.0222	Unknown	60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT3G55280	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3716	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4442	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G02400	Predicted Affinity Capture-MS	FSW = 0.0570	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT4G15770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3596	Unknown	RNA BINDING / PROTEIN BINDING
AT4G16630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4213	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G25730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1655	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.0471	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G28450	Predicted Affinity Capture-MS	FSW = 0.1814	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30991	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2209	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.2712	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G03850	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28B)
AT2G36930	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2453	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G56640	Predicted Synthetic Lethality	FSW = 0.0130	Unknown	EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G60860	Predicted Synthetic Lethality	FSW = 0.0228	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT5G05450	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3889	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2455	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4470	Unknown	PESCADILLO-RELATED
AT5G20600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3534	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G57160	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0797	Unknown	ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G65900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4893	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G08420	Predicted Affinity Capture-MS	FSW = 0.2345	Unknown	RNA BINDING
AT5G15750	Predicted Affinity Capture-MS	FSW = 0.1490	Unknown	RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G30495	Predicted Affinity Capture-MS	FSW = 0.0173	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK)
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.2829	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G59980	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	RNASE P SUBUNIT P30 FAMILY PROTEIN
AT5G61770	Predicted Affinity Capture-MS	FSW = 0.3220	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G21140	Predicted two hybrid	FSW = 0.0082	Unknown	EMB1379 (EMBRYO DEFECTIVE 1379)
AT1G52930	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3201	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT1G77050	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1305	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT1G29965	Predicted Affinity Capture-MS	FSW = 0.1954	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT1G36240	Predicted Affinity Capture-MS	FSW = 0.1460	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.1130	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G01960	Predicted Synthetic Lethality	FSW = 0.0309	Unknown	EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G04600 - ( RNA recognition motif (RRM)-containing protein )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown