Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G36240 - ( 60S ribosomal protein L30 (RPL30A) )
37 Proteins interacs with AT1G36240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | HISTONE H4 |
AT4G11010 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1859
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | DNA HELICASE-RELATED |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0341
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.1460
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.0676
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT3G07050 | PredictedAffinity Capture-MS | FSW = 0.0898
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0638
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT5G59230 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G07470 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT4G26910 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | GLYCINE-RICH PROTEIN |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT1G77940 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1254
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30B) |
AT1G18090 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | EXONUCLEASE PUTATIVE |
AT4G15030 | Predictedtwo hybridtwo hybrid | FSW = 0.0493
| Unknown | UNKNOWN PROTEIN |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | PESCADILLO-RELATED |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | RNA BINDING |
AT5G03220 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT4G11820 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT3G51270 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G11450 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0792
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G21160 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.1189
| Unknown | SDA1 FAMILY PROTEIN |
AT5G61770 | PredictedAffinity Capture-MS | FSW = 0.0783
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT1G29630 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | NUCLEASE |
AT5G43710 | Predictedtwo hybrid | FSW = 0.0382
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT3G18740 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3806
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454