Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43710 - ( glycoside hydrolase family 47 protein )
19 Proteins interacs with AT5G43710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G77510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0540
| Unknown | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT5G60640 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT2G34480 | PredictedSynthetic Lethality | FSW = 0.0167
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G12770 | Predictedtwo hybrid | FSW = 0.0661
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT2G24490 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G30000 | PredictedGene fusion methodCo-expression | FSW = 0.0455
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT1G01020 | PredictedPhenotypic Suppression | FSW = 0.0203
| Unknown | ARV1 |
AT3G14600 | Predictedinteraction prediction | FSW = 0.0783
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT5G22400 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G18740 | Predictedinteraction predictiontwo hybrid | FSW = 0.0178
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT4G22330 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0383
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT5G06360 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0165
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G07800 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G12130 | Predictedinterologs mapping | FSW = 0.0348
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G36240 | Predictedtwo hybrid | FSW = 0.0382
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT4G27690 | Predictedtwo hybrid | FSW = 0.0978
| Unknown | VPS26B (VACUOLAR PROTEIN SORTING 26B) |
AT5G53530 | Predictedinteraction prediction | FSW = 0.0863
| Unknown | VPS26A (VACUOLAR PROTEIN SORTING 26A) |
AT5G06600 | Predictedinteraction prediction | FSW = 0.0220
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454