Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G06360 - ( ribosomal protein S8e family protein )
41 Proteins interacs with AT5G06360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0911
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.2224
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.1241
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0069
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.2435
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G39740 | PredictedAffinity Capture-Western | FSW = 0.2058
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3174
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3970
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2455
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3533
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0966
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G17590 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3704
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3937
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G55920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2374
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4228
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.1338
| Unknown | RNA HELICASE PUTATIVE |
AT1G30500 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | NF-YA7 (NUCLEAR FACTOR Y SUBUNIT A7) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT2G34720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0591
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT3G18600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1573
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G29800 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G20510 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.3362
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1939
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G38630 | Predictedtwo hybridCo-expression | FSW = 0.0039
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3740
| Unknown | SDA1 FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3034
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3944
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3769
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2828
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G32415 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3131
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.2760
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G43710 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0165
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G52820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2745
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT5G38290 | Predictedtwo hybrid | FSW = 0.0515
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G63650 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2264
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454