Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40360 - ( transducin family protein / WD-40 repeat family protein )
85 Proteins interacs with AT2G40360| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G17920
   | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0248
| Class C:peroxisome | ATMS1 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ COPPER ION BINDING / METHIONINE SYNTHASE |
| AT3G09630
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0943
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G05710
| PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
| AT1G43170
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2457
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G13940
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0176
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
| AT3G23810
| PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
| AT5G25780
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0169
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT3G03780
| PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE |
| AT4G26970
| Predictedinteraction prediction | FSW = 0.0074
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT2G47250
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0326
| Unknown | RNA HELICASE PUTATIVE |
| AT1G64190
| PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT1G22940
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0121
| Unknown | TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3757
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT3G01610
| PredictedAffinity Capture-MS | FSW = 0.3128
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2462
| Unknown | RNA BINDING |
| AT4G35830
| PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
| AT1G08820
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0055
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
| AT5G25754 | Predictedtwo hybridtwo hybrid | FSW = 0.0057
| Unknown | UNKNOWN PROTEIN |
| AT5G12480
| Predictedbiochemical | FSW = 0.0152
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G44860
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3285
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3706
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25630
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1565
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3620
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2028
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3819
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
| AT1G65030
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1433
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3556
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5153
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT5G08180
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1339
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT4G10710
| PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
| AT4G10670
| PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | GTC2 |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4556
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G55920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4495
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G07050
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4036
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G62310
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1434
| Unknown | RNA HELICASE PUTATIVE |
| AT3G18600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2390
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3626
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexinteraction predictionCo-expression | FSW = 0.4456
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G41670
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0225
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT5G26710
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0038
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
| AT3G02530
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0043
| Unknown | CHAPERONIN PUTATIVE |
| AT2G47990
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0299
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G50920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3894
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT3G22660
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3635
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2604
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G45790
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2425
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G79150
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4007
| Unknown | BINDING |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5196
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4292
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G03530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0711
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G13160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1860
| Unknown | SDA1 FAMILY PROTEIN |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT2G19540
| Predictedinterologs mapping | FSW = 0.0343
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G37840
| Predictedbiochemical | FSW = 0.0336
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G39840
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0262
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3554
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2149
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT4G01560
| PredictedAffinity Capture-MS | FSW = 0.4829
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4879
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT4G30870
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT4G34910
| PredictedAffinity Capture-MS | FSW = 0.2713
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
| AT5G05450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4432
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT5G06360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3174
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT5G13780
| PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G14520
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-expression | FSW = 0.4489
| Unknown | PESCADILLO-RELATED |
| AT5G20600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3695
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G61770
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3552
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT3G49470
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0193
| Unknown | NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.1817
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G15770
| PredictedAffinity Capture-MS | FSW = 0.3727
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT5G02310
| PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
| AT5G65900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3922
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3953
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G11240
| PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | UNKNOWN PROTEIN |
| AT3G19420
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
| AT1G33040
| PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT1G71280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1249
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0624
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1198
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.2149
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT3G24030
| Predictedinteraction predictiontwo hybrid | FSW = 0.0114
| Unknown | HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0664
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G39770
| Predictedinteraction prediction | FSW = 0.0489
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT1G71370
| Predictedinteraction prediction | FSW = 0.1118
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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