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AT3G55620 - ( emb1624 (embryo defective 1624) ribosome binding / translation initiation factor )

104 Proteins interacs with AT3G55620

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2147	Class C: nucleus	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G33120	Predicted Affinity Capture-MS	FSW = 0.0175	Class C: nucleus	60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.1687	Class C: nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.1502	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0688	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.2075	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.1387	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G43170	Predicted Affinity Capture-MS	FSW = 0.1818	Class C: nucleus	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G07110	Predicted Affinity Capture-MS	FSW = 0.0888	Class C: nucleus	60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.0055	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940	Predicted Affinity Capture-MS	FSW = 0.0063	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G39740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3130	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.2326	Class C: nucleus	RNA BINDING
AT2G44860	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.2826	Class C: nucleus	60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3543	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1346	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3578	Class C: nucleus	GTP-BINDING PROTEIN-RELATED
AT1G17590	Predicted Affinity Capture-MS	FSW = 0.0350	Class C: nucleus	NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2202	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4033	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT1G65030	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1192	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G72440	Predicted Affinity Capture-Western	FSW = 0.3556	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4632	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.2222	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4743	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.2450	Class C: nucleus	UNKNOWN PROTEIN
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4040	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G07050	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.3933	Class C: nucleus	GTP-BINDING FAMILY PROTEIN
AT5G15550	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4271	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G24500	Predicted Affinity Capture-Western	FSW = 0.0282	Class C: nucleus	FZF TRANSCRIPTION FACTOR
AT2G34720	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0351	Class C: nucleus	NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT3G20010	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0095	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G11100	Predicted Affinity Capture-MS	FSW = 0.0238	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED
AT3G18600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1804	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.0604	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT1G33140	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1429	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G12580	Predicted Affinity Capture-MS	FSW = 0.0242	Unknown	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.2060	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT3G23990	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT5G25780	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0333	Unknown	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.2962	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS	FSW = 0.3750	Unknown	RIBOSOMAL PROTEIN-RELATED
AT1G17745	Predicted two hybrid interaction prediction	FSW = 0.0109	Unknown	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0260	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.2041	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G60790	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.0435	Unknown	ATGCN1 TRANSPORTER
AT3G16780	Predicted Affinity Capture-MS	FSW = 0.0185	Unknown	60S RIBOSOMAL PROTEIN L19 (RPL19B)
AT4G11420	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0355	Unknown	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT1G07630	Predicted Affinity Capture-MS	FSW = 0.0249	Unknown	PLL5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G79930	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	HSP91 ATP BINDING
AT2G40360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3626	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G50920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4495	Unknown	GTP-BINDING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2920	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G13160	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3533	Unknown	SDA1 FAMILY PROTEIN
AT1G25260	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2857	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G29940	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0054	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0417	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G52980	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2716	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G79150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3602	Unknown	BINDING
AT2G18220	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.4671	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G27200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1563	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G38710	Predicted Affinity Capture-MS	FSW = 0.0556	Unknown	AMMECR1 FAMILY
AT3G15460	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3468	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18520	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0061	Unknown	HDA15 HISTONE DEACETYLASE
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.2005	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT1G43860	Predicted Synthetic Rescue	FSW = 0.0245	Unknown	TRANSCRIPTION FACTOR
AT1G60780	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0710	Unknown	HAP13 (HAPLESS 13) PROTEIN BINDING
AT1G67190	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	F-BOX FAMILY PROTEIN
AT2G36930	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2346	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.1860	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G22980	Predicted Synthetic Rescue interologs mapping	FSW = 0.0370	Unknown	ELONGATION FACTOR TU FAMILY PROTEIN
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.2537	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4178	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G15770	Predicted Affinity Capture-MS	FSW = 0.3225	Unknown	RNA BINDING / PROTEIN BINDING
AT4G16630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3737	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT5G02760	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0212	Unknown	PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN
AT5G05450	Predicted Affinity Capture-MS	FSW = 0.3804	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interaction prediction	FSW = 0.3704	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4848	Unknown	PESCADILLO-RELATED
AT5G20600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3025	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G27620	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0022	Unknown	CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G46030	Predicted interologs mapping	FSW = 0.0198	Unknown	UNKNOWN PROTEIN
AT5G52820	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1597	Unknown	WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G57160	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0948	Unknown	ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61770	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3197	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3529	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G56150	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0249	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G14910	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE PUTATIVE
AT4G25730	Predicted Affinity Capture-MS	FSW = 0.1627	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G32720	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0093	Unknown	ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT1G75660	Predicted Affinity Capture-MS Co-expression	FSW = 0.0115	Unknown	XRN3 5-3 EXORIBONUCLEASE
AT2G40010	Predicted Affinity Capture-MS	FSW = 0.0147	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT2G23080	Predicted Affinity Capture-MS	FSW = 0.0920	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G10730	Predicted Affinity Capture-MS	FSW = 0.0566	Unknown	CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G77050	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2116	Unknown	CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G79880	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0145	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G08410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1744	Unknown	GTP-BINDING FAMILY PROTEIN
AT3G22425	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0374	Unknown	IGPD IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE
AT3G22860	Predicted Affinity Capture-MS	FSW = 0.0186	Unknown	TIF3C2 TRANSLATION INITIATION FACTOR
AT1G52930	Predicted Affinity Capture-MS	FSW = 0.3230	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT5G66640	Predicted in vitro two hybrid	FSW = 0.0061	Unknown	DAR3 (DA1-RELATED PROTEIN 3)
AT5G67380	Predicted interaction prediction	FSW = 0.0620	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G39820	Predicted Phylogenetic profile method Co-expression	FSW = 0.0093	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 6 PUTATIVE / EIF-6 PUTATIVE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G55620 - ( emb1624 (embryo defective 1624) ribosome binding / translation initiation factor )

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