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AT2G47610 - ( 60S ribosomal protein L7A (RPL7aA) )

91 Proteins interacs with AT2G47610

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3115	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4443	Class C: vacuole plastid nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.3039	Class C: vacuole plastid nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3672	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4491	Class C: vacuole plastid nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1920	Class C: vacuole plastid	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3168	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4408	Class C: vacuole nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.4396	Class C: vacuole nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3770	Class C: vacuole nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.2925	Class C: vacuole	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3857	Class C: vacuole	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3062	Class C: vacuole	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G73430	Predicted interologs mapping	FSW = 0.0077	Class C: vacuole	SEC34-LIKE FAMILY PROTEIN
AT3G62870	Predicted Phylogenetic profile method Co-expression	FSW = 0.0172	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G66580	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.4109	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G26590	Predicted biochemical	FSW = 0.0041	Class C: vacuole	MATE EFFLUX FAMILY PROTEIN
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2531	Class C: plastid nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.3724	Class C: plastid	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4901	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS Co-expression	FSW = 0.2169	Class C: plastid	RIBOSOMAL PROTEIN-RELATED
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3879	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G09840	Predicted Affinity Capture-MS	FSW = 0.0210	Class C: nucleus	CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT3G01610	Predicted Affinity Capture-MS	FSW = 0.1357	Class C: nucleus	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G05560	Predicted interologs mapping Synthetic Lethality Phenotypic Enhancement Phenotypic Suppression	FSW = 0.0084	Class C: nucleus	60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3830	Class C: nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4109	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5162	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT5G04600	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3437	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4314	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G57150	Predicted Affinity Capture-MS Co-expression	FSW = 0.1673	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT1G17980	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0240	Class C: nucleus	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.3796	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.1195	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G07260	Predicted Phenotypic Enhancement	FSW = 0.0100	Class C: nucleus	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G72440	Predicted Affinity Capture-MS Co-expression	FSW = 0.3392	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.1694	Class C: nucleus	UNKNOWN PROTEIN
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.1107	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G16810	Predicted Affinity Capture-MS Co-expression	FSW = 0.3111	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G07050	Predicted Affinity Capture-MS Co-expression	FSW = 0.1354	Class C: nucleus	GTP-BINDING FAMILY PROTEIN
AT2G37990	Predicted Affinity Capture-MS	FSW = 0.0796	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.2075	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3088	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4203	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G15550	Predicted Affinity Capture-MS Co-expression	FSW = 0.2158	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4682	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.1984	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.3511	Unknown	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4508	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G60790	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0990	Unknown	ATGCN1 TRANSPORTER
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3788	Unknown	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2906	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G55860	Predicted two hybrid	FSW = 0.0286	Unknown	UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT5G28060	Predicted Phenotypic Suppression	FSW = 0.0206	Unknown	40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G17620	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2634	Unknown	GLYCINE-RICH PROTEIN
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.5199	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted biochemical	FSW = 0.1900	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G25280	Predicted two hybrid two hybrid	FSW = 0.0253	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEDIATOR OF ERBB2-DRIVEN CELL MOTILITY (MEMO) RELATED (INTERPROIPR002737) HAS 742 BLAST HITS TO 742 PROTEINS IN 323 SPECIES ARCHAE - 138 BACTERIA - 240 METAZOA - 132 FUNGI - 82 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 124 (SOURCE NCBI BLINK)
AT1G76920	Predicted Phenotypic Enhancement	FSW = 0.0117	Unknown	F-BOX FAMILY PROTEIN (FBX3)
AT2G03820	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS	FSW = 0.1007	Unknown	NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0545	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.3139	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G36260	Predicted Phenotypic Enhancement	FSW = 0.0238	Unknown	IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE
AT2G36930	Predicted Affinity Capture-MS	FSW = 0.1227	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39840	Predicted Affinity Capture-MS	FSW = 0.0672	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G01090	Predicted biochemical	FSW = 0.0086	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4682	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT5G08420	Predicted Affinity Capture-MS	FSW = 0.1253	Unknown	RNA BINDING
AT5G14520	Predicted Affinity Capture-MS Co-expression	FSW = 0.2253	Unknown	PESCADILLO-RELATED
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0169	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.3883	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4116	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G46960	Predicted Synthetic Rescue Phenotypic Suppression	FSW = 0.0817	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4153	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G61620	Predicted Synthetic Rescue	FSW = 0.0377	Unknown	RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING
AT5G38890	Predicted Phenotypic Suppression	FSW = 0.0221	Unknown	EXORIBONUCLEASE-RELATED
AT2G29400	Predicted Affinity Capture-MS	FSW = 0.0411	Unknown	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.2206	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G13640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0753	Unknown	ATRLI1 TRANSPORTER
AT4G15770	Predicted Affinity Capture-MS Co-expression	FSW = 0.1822	Unknown	RNA BINDING / PROTEIN BINDING
AT4G01560	Predicted Affinity Capture-MS Co-expression	FSW = 0.2138	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0227	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.1709	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0321	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G21440	Predicted Affinity Capture-MS	FSW = 0.2140	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.0385	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G52930	Predicted Affinity Capture-MS Co-expression	FSW = 0.1711	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT1G21160	Predicted Affinity Capture-MS	FSW = 0.1093	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G13160	Predicted Affinity Capture-MS Co-expression	FSW = 0.1607	Unknown	SDA1 FAMILY PROTEIN
AT1G08410	Predicted Affinity Capture-MS	FSW = 0.0711	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G04170	Predicted Affinity Capture-MS Co-expression	FSW = 0.0613	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G47610 - ( 60S ribosomal protein L7A (RPL7aA) )

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