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AT2G34480 - ( 60S ribosomal protein L18A (RPL18aB) )

90 Proteins interacs with AT2G34480

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G42580	Experimental phage display	FSW = 0.0091	Unknown	TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4146	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.2766	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4165	Class C: vacuole plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4021	Class C: vacuole plasma membrane	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2370	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4245	Class C: vacuole plasma membrane	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1682	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.2684	Class C: vacuole plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.3568	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.2846	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G12140	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3282	Class C: vacuole plasma membrane	ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3308	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2702	Class C: vacuole	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3062	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT4G01320	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1336	Class C: vacuole	ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.3860	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2979	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.3260	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.3720	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3306	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3513	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.3306	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT1G73230	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1505	Class C: plasma membrane	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3860	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G75170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.2856	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3140	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4142	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.3064	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G33090	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1076	Class C: plasma membrane	APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2618	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3566	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G35020	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1641	Class C: plasma membrane	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G77210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2350	Class C: plasma membrane	SUGAR TRANSPORTER PUTATIVE
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3507	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT4G24770	Predicted two hybrid two hybrid	FSW = 0.0113	Unknown	RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING
AT2G44350	Predicted Affinity Capture-MS	FSW = 0.1798	Unknown	ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3279	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G23940	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1675	Unknown	DEHYDRATASE FAMILY
AT2G30390	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2402	Unknown	FC2 (FERROCHELATASE 2) FERROCHELATASE
AT2G44680	Predicted two hybrid two hybrid	FSW = 0.0083	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.1700	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.3940	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4544	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.3228	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1000	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G05060	Predicted Affinity Capture-MS	FSW = 0.0661	Unknown	SAR DNA-BINDING PROTEIN PUTATIVE
AT2G40290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1837	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G36590	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3530	Unknown	MADS-BOX PROTEIN (AGL40)
AT4G34430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0791	Unknown	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G47630	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0818	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT3G14600	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0473	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AC)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3327	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2140	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.3001	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.3064	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.2405	Unknown	UNKNOWN PROTEIN
AT4G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0220	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G19310	Predicted two hybrid two hybrid	FSW = 0.0225	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G11010	Predicted two hybrid two hybrid Co-expression	FSW = 0.0800	Unknown	PRE-MRNA CLEAVAGE COMPLEX-RELATED
AT1G10600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3500	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK)
AT1G27320	Predicted Affinity Capture-MS	FSW = 0.0894	Unknown	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G43080	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.3003	Unknown	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT1G07270	Predicted Synthetic Lethality	FSW = 0.0027	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT2G13680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0072	Unknown	CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G39840	Predicted Affinity Capture-MS	FSW = 0.0309	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G47970	Predicted Affinity Capture-MS	FSW = 0.1358	Unknown	NPL4 FAMILY PROTEIN
AT3G15460	Predicted Affinity Capture-MS	FSW = 0.1113	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1117	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3537	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G30842	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0823	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3379	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G59410	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0220	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G25150	Predicted Affinity Capture-Western	FSW = 0.0124	Unknown	ACID PHOSPHATASE PUTATIVE
AT5G43710	Predicted Synthetic Lethality	FSW = 0.0167	Unknown	GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT5G46150	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.1348	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G59440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1784	Unknown	ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G63740	Predicted two hybrid	FSW = 0.0115	Unknown	ZINC FINGER PROTEIN-RELATED
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.1811	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G34980	Predicted Affinity Capture-MS	FSW = 0.1052	Unknown	SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G46070	Predicted co-fractionation Co-fractionation Affinity Capture-MS	FSW = 0.1486	Unknown	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT4G24160	Predicted Affinity Capture-Western	FSW = 0.0392	Unknown	HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G01640	Predicted Affinity Capture-MS	FSW = 0.2123	Unknown	PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT5G13010	Predicted Affinity Capture-MS	FSW = 0.1621	Unknown	EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G37830	Predicted Affinity Capture-MS	FSW = 0.1372	Unknown	OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G59850	Predicted Affinity Capture-MS	FSW = 0.1428	Unknown	40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT2G35390	Predicted two hybrid	FSW = 0.0151	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G23780	Predicted two hybrid	FSW = 0.0143	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G29965	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.0323	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AA)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G34480 - ( 60S ribosomal protein L18A (RPL18aB) )

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