Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G15000 - ( 60S ribosomal protein L27 (RPL27C) )
96 Proteins interacs with AT4G15000| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedAffinity Capture-MS | FSW = 0.5528
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.3856
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.4580
| Class C:plasma membrane | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.3528
| Class C:plasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.3555
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.5541
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.1847
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.3742
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.5071
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.3618
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.3053
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.3566
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.2641
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.4660
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.4812
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.4502
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.4060
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.4064
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.4213
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.4502
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT4G39180
| Predictedtwo hybrid | FSW = 0.0225
| Class C:plasma membrane | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.0757
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.4476
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G04750
| PredictedPhenotypic Enhancement | FSW = 0.0295
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT5G46430
| PredictedAffinity Capture-MS | FSW = 0.4178
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.5898
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.4922
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.3002
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT3G22230
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0531
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27B) |
| AT2G37790
| PredictedPhenotypic Enhancement | FSW = 0.0315
| Class C:plasma membrane | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.3169
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.3788
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT5G09590
| PredictedAffinity Capture-Western | FSW = 0.0333
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.4129
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.4502
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT3G22110
| PredictedPhenotypic Enhancement | FSW = 0.0192
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0268
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.4649
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT3G07100
| Predictedtwo hybrid | FSW = 0.0420
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
| AT1G14030
| Predictedtwo hybrid | FSW = 0.0323
| Unknown | RIBULOSE-15 BISPHOSPHATE CARBOXYLASE OXYGENASE LARGE SUBUNIT N-METHYLTRANSFERASE PUTATIVE |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.3933
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G23310
| PredictedPhenotypic Enhancement | FSW = 0.0214
| Unknown | FSD3 (FE SUPEROXIDE DISMUTASE 3) SUPEROXIDE DISMUTASE |
| AT4G16760
| Predictedtwo hybrid | FSW = 0.0245
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
| AT5G04990
| Predictedtwo hybrid | FSW = 0.0186
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1997
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G44900
| PredictedAffinity Capture-Western | FSW = 0.0334
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
| AT3G23620
| PredictedAffinity Capture-MS | FSW = 0.1102
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G76300
| Predictedtwo hybrid | FSW = 0.0254
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.4815
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.3074
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT3G53020
| PredictedAffinity Capture-MS | FSW = 0.3341
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.4046
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.3894
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.3734
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT3G16810
| PredictedAffinity Capture-MS | FSW = 0.1495
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G55920
| PredictedAffinity Capture-MS | FSW = 0.1238
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G28460
| PredictedPhenotypic Enhancement | FSW = 0.0200
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G70190
| Predictedtwo hybrid | FSW = 0.0451
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT1G64880
| PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.3992
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.1731
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.4418
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.1823
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.4237
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT4G39200
| PredictedPhenotypic Enhancement | FSW = 0.0299
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0644
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT2G17800
| PredictedPhenotypic Enhancement | FSW = 0.0055
| Unknown | ARAC1 GTP BINDING |
| AT4G15900
| Predictedtwo hybrid | FSW = 0.0164
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G05180
| PredictedPhenotypic Enhancement | FSW = 0.0209
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
| AT2G16950
| Predictedtwo hybrid | FSW = 0.0241
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT4G18465 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | RNA HELICASE PUTATIVE |
| AT5G16260
| Predictedtwo hybrid | FSW = 0.0253
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.2106
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G55150
| PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
| AT1G59580
| Predictedtwo hybridAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0254
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
| AT1G68020
| PredictedPhenotypic Enhancement | FSW = 0.0534
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT2G37420
| PredictedPhenotypic Enhancement | FSW = 0.0259
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT3G14100
| PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0092
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT3G15460
| PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.4127
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G23390
| PredictedAffinity Capture-MS | FSW = 0.4924
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.3618
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.5018
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.4019
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
| AT1G66950
| Predictedtwo hybrid | FSW = 0.0352
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G71530
| Predictedtwo hybrid | FSW = 0.0362
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G46650
| Predictedtwo hybrid | FSW = 0.0695
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
| AT3G13330 | PredictedAffinity Capture-Western | FSW = 0.0280
| Unknown | BINDING |
| AT3G51110
| Predictedtwo hybrid | FSW = 0.0147
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT4G30820
| Predictedtwo hybrid | FSW = 0.0437
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
| AT5G19090
| Predictedtwo hybrid | FSW = 0.0333
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
| AT4G15770
| PredictedAffinity Capture-MS | FSW = 0.0864
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G38250
| PredictedPhenotypic Suppression | FSW = 0.0097
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.1832
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G32220
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0483
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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