Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19090 - ( heavy-metal-associated domain-containing protein )
35 Proteins interacs with AT5G19090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G60640 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0111
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT1G15880 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | GOS11 (GOLGI SNARE 11) SNARE BINDING |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | Predictedtwo hybrid | FSW = 0.0318
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT3G07100 | Predictedtwo hybrid | FSW = 0.1500
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT1G11320 | Predictedtwo hybrid | FSW = 0.1322
| Unknown | UNKNOWN PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.1526
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT2G42590 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G29810 | PredictedPhenotypic Enhancement | FSW = 0.0188
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G06390 | PredictedPhenotypic Enhancement | FSW = 0.0390
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0246
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT2G47210 | Predictedtwo hybrid | FSW = 0.0857
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT4G39160 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT3G29800 | Predictedtwo hybrid | FSW = 0.0930
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1337
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G69220 | Predictedin vitro | FSW = 0.0215
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G08700 | PredictedPhenotypic Enhancement | FSW = 0.1154
| Unknown | PRESENILIN FAMILY PROTEIN |
AT2G43460 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G44120 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0889
| Unknown | C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT4G36870 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0667
| Unknown | BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G15540 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G07570 | Predictedin vivoin vivoin vivo | FSW = 0.1053
| Unknown | GLYCINE/PROLINE-RICH PROTEIN |
AT5G10220 | Predictedin vitroAffinity Capture-MS | FSW = 0.0183
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT1G07880 | Predictedtwo hybrid | FSW = 0.1091
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G29230 | Predictedtwo hybrid | FSW = 0.1939
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G68390 | Predictedtwo hybrid | FSW = 0.1371
| Unknown | UNKNOWN PROTEIN |
AT1G71530 | Predictedtwo hybrid | FSW = 0.3228
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.3529
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT4G14370 | Predictedtwo hybrid | FSW = 0.0602
| Unknown | PHOSPHOINOSITIDE BINDING |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1935
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G61220 | Predictedtwo hybrid | FSW = 0.1633
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
AT5G38290 | Predictedtwo hybrid | FSW = 0.2250
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G52210 | Predictedtwo hybrid | FSW = 0.0336
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454