Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36870 - ( BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA binding / transcription factor )
19 Proteins interacs with AT4G36870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G62360 | Experimentaltwo hybrid | FSW = 0.0921
| Unknown | STM (SHOOT MERISTEMLESS) TRANSCRIPTION FACTOR |
AT4G32040 | Experimentaltwo hybrid | FSW = 0.4444
| Unknown | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G25220 | Experimentaltwo hybrid | FSW = 0.3386
| Unknown | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G08150 | Experimentaltwo hybrid | FSW = 0.1739
| Unknown | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) TRANSCRIPTION FACTOR |
AT1G70510 | Experimentaltwo hybrid | FSW = 0.2105
| Unknown | KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) TRANSCRIPTION FACTOR |
AT1G23380 | Experimentaltwo hybrid | FSW = 0.3156
| Unknown | KNAT6 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G26260 | Experimentaltwo hybrid | FSW = 0.2353
| Unknown | CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G18830 | Experimentaltwo hybrid | FSW = 0.1423
| Unknown | OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) |
AT5G01840 | Experimentaltwo hybrid | FSW = 0.3300
| Unknown | OFP1 (OVATE FAMILY PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION REPRESSOR |
AT2G35940 | Experimentaltwo hybrid | FSW = 0.3939
| Unknown | BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
AT2G30400 | Experimentaltwo hybrid | FSW = 0.3457
| Unknown | OFP2 (OVATE FAMILY PROTEIN 2) |
AT1G06920 | Experimentaltwo hybrid | FSW = 0.3457
| Unknown | OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) |
AT5G58360 | Experimentaltwo hybrid | FSW = 0.2667
| Unknown | ATOFP3 |
AT3G27100 | PredictedPhenotypic Suppression | FSW = 0.0661
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
AT2G43460 | PredictedPhenotypic Enhancement | FSW = 0.0412
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT4G02020 | PredictedPhenotypic Suppression | FSW = 0.0242
| Unknown | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT1G31810 | PredictedPhenotypic Enhancement | FSW = 0.0661
| Unknown | ACTIN BINDING |
AT5G15540 | PredictedPhenotypic Enhancement | FSW = 0.0783
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G19090 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0667
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454