Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43460 - ( 60S ribosomal protein L38 (RPL38A) )
34 Proteins interacs with AT2G43460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | HISTONE H4 |
AT3G47520 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0351
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G20260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.0303
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G36750 | PredictedReconstituted ComplexSynthetic Rescue | FSW = 0.1063
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT1G65240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternReconstituted ComplexCo-crystal Structure | FSW = 0.1841
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0502
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G17430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0539
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT3G09740 | Predictedinterologs mapping | FSW = 0.0296
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G69850 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT1G76300 | PredictedSynthetic Lethality | FSW = 0.0178
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT1G77950 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0379
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT1G20580 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0075
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0585
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G18600 | PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33730 | Predictedinterologs mappingsynthetic growth defectinterologs mapping | FSW = 0.0767
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G51310 | Predictedtwo hybridtwo hybrid | FSW = 0.0249
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT4G36870 | PredictedPhenotypic Enhancement | FSW = 0.0412
| Unknown | BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G19090 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G49010 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0243
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G08260 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1209
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G18830 | PredictedSynthetic Rescue | FSW = 0.0200
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G59580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0269
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G17520 | PredictedReconstituted Complex | FSW = 0.1261
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G58180 | PredictedReconstituted Complex | FSW = 0.0566
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT3G59790 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT5G11570 | PredictedAffinity Capture-MS | FSW = 0.1728
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G01320 | PredictedSynthetic Lethality | FSW = 0.0166
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G08410 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0549
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0639
| Unknown | SDA1 FAMILY PROTEIN |
AT5G61770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0198
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G44320 | Predictedtwo hybridCo-expression | FSW = 0.0499
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT3G59540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0313
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454