Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06380 - ( ribosomal protein-related )
85 Proteins interacs with AT1G06380| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25520
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3219
| Class C:plastid | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27400
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1003
| Class C:plastid | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.1002
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT2G47610
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2169
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G51260
| PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0265
| Class C:plastid | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G07110
| PredictedAffinity Capture-MS | FSW = 0.0879
| Class C:plastid | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
| AT2G40510
| PredictedAffinity Capture-MS | FSW = 0.0114
| Class C:plastid | 40S RIBOSOMAL PROTEIN S26 (RPS26A) |
| AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1224
| Class C:plastid | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
| AT2G47250
| PredictedAffinity Capture-MS | FSW = 0.0801
| Class C:plastid | RNA HELICASE PUTATIVE |
| AT1G43170
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3109
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G04270
| PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.0696
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G14320
| PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G01610
| PredictedAffinity Capture-MS | FSW = 0.2084
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT4G18100
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32A) |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2347
| Unknown | RNA BINDING |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT2G39460
| PredictedAffinity Capture-MS | FSW = 0.1845
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53890
| PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT2G19740
| PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31A) |
| AT1G53750
| PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0043
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3757
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2541
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4266
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5416
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1485
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2970
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G17590
| PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
| AT3G55620
| PredictedAffinity Capture-MS | FSW = 0.3750
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT1G23290
| PredictedAffinity Capture-MS | FSW = 0.1135
| Unknown | RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G65030
| PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3819
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G57150
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1079
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3975
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G07050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4892
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4125
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0968
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G56110
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0389
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT3G18600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2956
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G37990
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1414
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4011
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G47990
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0299
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G10490
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1056
| Unknown | UNKNOWN PROTEIN |
| AT2G43460
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0502
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
| AT2G05840
| PredictedAffinity Capture-Western | FSW = 0.0180
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G13060
| PredictedCo-purification | FSW = 0.0376
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G22660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2010
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT1G52930
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5429
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2063
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G55150
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0204
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3263
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1831
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3156
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4456
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT5G46840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2013
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G69070
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0563
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4132
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4489
| Unknown | PESCADILLO-RELATED |
| AT5G06360
| PredictedAffinity Capture-MS | FSW = 0.2435
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3439
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT1G36240
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1859
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
| AT2G25210 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39A) |
| AT1G13160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3750
| Unknown | SDA1 FAMILY PROTEIN |
| AT4G25730
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1394
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT1G71280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1449
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G52820
| PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
| AT5G61770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3268
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT2G40430
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0868
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
| AT5G02530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0870
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2268
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G21160
| PredictedAffinity Capture-MS | FSW = 0.2092
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT5G57160
| PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
| AT2G36930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2458
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0624
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1660
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G10730
| PredictedAffinity Capture-MS | FSW = 0.0832
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G79150
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2963
| Unknown | BINDING |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.2516
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT1G04480 | PredictedAffinity Capture-MS | FSW = 0.0772
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
| AT3G48960
| PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
| AT2G34357 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1336
| Unknown | BINDING |
| AT1G52980
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2490
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G56450
| PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0244
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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