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AT3G05060 - ( SAR DNA-binding protein putative )

98 Proteins interacs with AT3G05060

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted Affinity Capture-MS Co-expression	FSW = 0.0420	Class C: nucleus	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.0966	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G15200	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2086	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G60770	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0684	Class C: nucleus	40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT5G20290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2004	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G67630	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0218	Class C: nucleus	DNA HELICASE PUTATIVE
AT5G22330	Predicted Affinity Capture-MS	FSW = 0.0411	Class C: nucleus	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.0557	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2979	Class C: nucleus	RNA BINDING
AT2G04390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0989	Class C: nucleus	40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.1064	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT4G00100	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2409	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2257	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1190	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G13940	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0134	Class C: nucleus	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G57150	Predicted Affinity Capture-MS Co-expression	FSW = 0.3373	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT5G61760	Predicted two hybrid	FSW = 0.0364	Class C: nucleus	ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE
AT3G12860	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS two hybrid interologs mapping interaction prediction Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5056	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2426	Class C: nucleus	RNA HELICASE PUTATIVE
AT3G06720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0373	Class C: nucleus	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G56110	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Phylogenetic profile method Co-expression	FSW = 0.2041	Class C: nucleus	NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT5G27120	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.0962	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT4G25630	Predicted Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.3703	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300	Predicted Affinity Capture-MS	FSW = 0.0427	Class C: nucleus	GTP-BINDING PROTEIN-RELATED
AT2G41500	Predicted Affinity Capture-MS Co-expression	FSW = 0.0557	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.0128	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G48920	Predicted Affinity Capture-MS Co-expression	FSW = 0.1895	Class C: nucleus	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G44200	Predicted Synthetic Lethality Co-expression	FSW = 0.0556	Class C: nucleus	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT5G54910	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1660	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G05410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4515	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4618	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT1G55520	Predicted Affinity Capture-MS	FSW = 0.0084	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G18600	Predicted Affinity Capture-MS Co-expression	FSW = 0.0780	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3666	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G57000	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3200	Class C: nucleus	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1994	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G22380	Predicted two hybrid two hybrid Affinity Capture-MS	FSW = 0.0698	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G63780	Predicted Affinity Capture-MS Co-expression	FSW = 0.1611	Class C: nucleus	IMP4
AT3G21540	Predicted Affinity Capture-MS Co-expression	FSW = 0.2486	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G17360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1658	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G07770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1851	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.0661	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G16630	Predicted Affinity Capture-MS	FSW = 0.0175	Unknown	RAD4 DAMAGED DNA BINDING
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4093	Unknown	BINDING
AT2G47250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1097	Unknown	RNA HELICASE PUTATIVE
AT5G53480	Predicted Affinity Capture-MS	FSW = 0.0164	Unknown	IMPORTIN BETA-2 PUTATIVE
AT3G49830	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0420	Unknown	DNA HELICASE-RELATED
AT1G06380	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0968	Unknown	RIBOSOMAL PROTEIN-RELATED
AT5G17310	Predicted Affinity Capture-MS	FSW = 0.0630	Unknown	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0459	Unknown	ATGCN1 TRANSPORTER
AT3G03250	Predicted Affinity Capture-MS	FSW = 0.1233	Unknown	UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G42520	Predicted Affinity Capture-MS	FSW = 0.0298	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT4G30990	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0367	Unknown	BINDING
AT2G47990	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2594	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.0694	Unknown	GTP-BINDING PROTEIN-RELATED
AT5G07370	Predicted two hybrid	FSW = 0.0212	Unknown	IPK2A (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA) INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE
AT3G60360	Predicted Affinity Capture-MS Co-expression	FSW = 0.0178	Unknown	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2000	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS Co-expression	FSW = 0.0412	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G53300	Predicted Affinity Capture-MS	FSW = 0.0690	Unknown	TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1) BINDING
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3524	Unknown	UNKNOWN PROTEIN
AT3G10090	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0282	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT3G07300	Predicted two hybrid two hybrid Co-expression	FSW = 0.0078	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT1G15420	Predicted Affinity Capture-MS Co-expression	FSW = 0.0684	Unknown	UNKNOWN PROTEIN
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2262	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0514	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G69070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.4133	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G43650	Predicted Affinity Capture-MS Co-expression	FSW = 0.0789	Unknown	EMB2777 (EMBRYO DEFECTIVE 2777)
AT1G03530	Predicted Affinity Capture-MS Co-expression	FSW = 0.0715	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G45231	Predicted Reconstituted Complex	FSW = 0.0353	Unknown	WW DOMAIN-CONTAINING PROTEIN
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.3087	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT3G01160	Predicted Affinity Capture-MS Co-expression	FSW = 0.0862	Unknown	UNKNOWN PROTEIN
AT3G56510	Predicted Affinity Capture-MS	FSW = 0.2551	Unknown	TBP-BINDING PROTEIN PUTATIVE
AT4G12620	Predicted Affinity Capture-MS	FSW = 0.0158	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT3G10530	Predicted Affinity Capture-MS Co-expression	FSW = 0.3214	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G18740	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1075	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT4G02400	Predicted Affinity Capture-MS Co-expression	FSW = 0.1139	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT4G04940	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2990	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G07410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3686	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25730	Predicted interaction prediction Affinity Capture-Western interologs mapping Co-expression	FSW = 0.0936	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G28200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3651	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450	Predicted Affinity Capture-MS Co-expression	FSW = 0.3278	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30991	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3166	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G15750	Predicted Affinity Capture-MS Co-expression	FSW = 0.3009	Unknown	RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1751	Unknown	TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2137	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0736	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT3G09670	Predicted Affinity Capture-MS	FSW = 0.0740	Unknown	PWWP DOMAIN-CONTAINING PROTEIN
AT1G47840	Predicted Affinity Capture-MS	FSW = 0.0388	Unknown	HXK3 (HEXOKINASE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G02690	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0464	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.0692	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G40490	Predicted Affinity Capture-MS Co-expression	FSW = 0.0313	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G36240	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0638	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G27470	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2226	Unknown	TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G33390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0833	Unknown	HELICASE DOMAIN-CONTAINING PROTEIN
AT4G35890	Predicted Affinity Capture-MS	FSW = 0.0549	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT4G12600	Predicted Affinity Capture-MS two hybrid Co-expression	FSW = 0.0596	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G27140	Predicted Phylogenetic profile method	FSW = 0.1407	Unknown	SAR DNA-BINDING PROTEIN PUTATIVE

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G05060 - ( SAR DNA-binding protein putative )

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