Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60360 - ( EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) )

70 Proteins interacs with AT3G60360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1319

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G10350

Predicted

Affinity Capture-MS

FSW = 0.2005

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.1263

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT5G65430

Predicted

Phenotypic Enhancement

FSW = 0.1004

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G22170

Predicted

synthetic growth defect

FSW = 0.1610

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.0173

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G60540

Predicted

Synthetic Lethality

FSW = 0.3272

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0157

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT4G36490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2021

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT2G32670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.4213

Unknown

ATVAMP725
AT1G04750

Predicted

Synthetic Lethality

FSW = 0.1752

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G30110

Predicted

Affinity Capture-MS

FSW = 0.0056

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT4G33090

Predicted

Synthetic Lethality

FSW = 0.1103

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT2G37790

Predicted

synthetic growth defect

FSW = 0.3167

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G80050

Predicted

Phenotypic Suppression

FSW = 0.2295

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G48880

Predicted

Synthetic Lethality

FSW = 0.0534

Unknown

PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G04460

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1509

Unknown

PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G25630

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0135

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G52250

Predicted

Synthetic Lethality

FSW = 0.1342

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.1165

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G05210

Predicted

two hybrid

FSW = 0.0256

Unknown

NUCLEOLAR MATRIX PROTEIN-RELATED
AT3G05060

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0178

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0348

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G25340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3344

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G66540

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0271

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT5G60980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.1635

Unknown

NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G30160

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2312

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G18480

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2146

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.1006

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT4G39200

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2994

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT4G16420

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1831

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT2G29540

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1245

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.1052

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0029

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G13580

Predicted

Synthetic Lethality

FSW = 0.2869

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G20693

Predicted

Phenotypic Suppression

FSW = 0.3016

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G29970

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3241

Unknown

RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G30580

Predicted

interologs mapping

FSW = 0.0053

Unknown

GTP BINDING
AT1G34580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1036

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G33560

Predicted

synthetic growth defect

FSW = 0.0542

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G37420

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3210

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G02000

Predicted

Phenotypic Enhancement

FSW = 0.1361

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G06483

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Synthetic Rescue

FSW = 0.3149

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G11230

Predicted

synthetic growth defect

FSW = 0.3580

Unknown

YIPPEE FAMILY PROTEIN
AT3G18660

Predicted

Synthetic Lethality

FSW = 0.0935

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G21460

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.1684

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G48150

Predicted

Synthetic Lethality

FSW = 0.0174

Unknown

APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT1G10280

Predicted

Phenotypic Enhancement

FSW = 0.0718

Unknown

UNKNOWN PROTEIN
AT1G11510

Predicted

synthetic growth defect

FSW = 0.1911

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0408

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G35350

Predicted

Synthetic Lethality

FSW = 0.1152

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.2173

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.0263

Unknown

BOR5 ANION EXCHANGER
AT2G48100

Predicted

Phenotypic Suppression

FSW = 0.1476

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G13210

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1933

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G47610

Predicted

synthetic growth defect

FSW = 0.0723

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G04700

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0639

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G14710

Predicted

Synthetic Lethality

FSW = 0.1703

Unknown

ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING
AT4G27130

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2440

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580

Predicted

Phenotypic Enhancement

FSW = 0.0375

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G14050

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0212

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14060

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2254

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G14180

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.3314

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G42720

Predicted

synthetic growth defect

FSW = 0.1610

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G54940

Predicted

synthetic growth defect

FSW = 0.2044

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G67540

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1981

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT5G01430

Predicted

Affinity Capture-MS

FSW = 0.2041

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G06600

Predicted

Affinity Capture-MS

FSW = 0.1545

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G44830

Predicted

Synthetic Lethality

FSW = 0.2382

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.2152

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454