Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G30580 - ( GTP binding )
38 Proteins interacs with AT1G30580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G08670 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0432
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G64790 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0043
| Unknown | BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0025
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G56050 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0091
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT5G49030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0529
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G45780 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0458
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19440 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE (CAD) |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G18524 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G20970 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT1G57720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0232
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0199
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G59950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0735
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT5G25150 | PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT3G13160 | PredictedGene fusion method | FSW = 0.0434
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G23890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0165
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT3G60360 | Predictedinterologs mapping | FSW = 0.0053
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0053
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G10090 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0111
| Unknown | UNKNOWN PROTEIN |
AT1G22290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1185
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G15420 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0135
| Unknown | UNKNOWN PROTEIN |
AT1G16280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0226
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G14240 | Predictedbiochemical | FSW = 0.0048
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G27040 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | VPS22 |
AT4G32175 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | RNA BINDING |
AT5G06150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0648
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT2G25355 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | EXONUCLEASE-RELATED |
AT3G49660 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G51270 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454