Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G57720 - ( elongation factor 1B-gamma putative / eEF-1B gamma putative )
33 Proteins interacs with AT1G57720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16640 | PredictedAffinity Capture-MS | FSW = 0.0261
| Class C:plasma membrane | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0493
| Class C:plasma membrane | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0162
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0693
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G60390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0443
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G48750 | PredictedPhenotypic Suppression | FSW = 0.0074
| Class C:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G30230 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westerninteraction prediction | FSW = 0.1912
| Class C:plasma membrane | ELONGATION FACTOR 1-BETA / EF-1-BETA |
AT1G09640 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2297
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G31780 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT4G01370 | Predictedbiochemical | FSW = 0.0094
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G10050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1325
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT1G08370 | Predictedtwo hybrid | FSW = 0.0608
| Unknown | DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0419
| Unknown | SGP1 GTP BINDING |
AT2G18760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G26710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0902
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT2G18110 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | ELONGATION FACTOR 1-BETA PUTATIVE / EF-1-BETA PUTATIVE |
AT4G36630 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G41770 | Predictedtwo hybridtwo hybrid | FSW = 0.0203
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G10170 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0278
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G30580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0232
| Unknown | GTP BINDING |
AT1G17720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0869
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G73960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0185
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT2G36930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0120
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0224
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G79990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0400
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G32730 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G24090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0259
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0128
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454