Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10170 - ( ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) protein binding / transcription factor/ zinc ion binding )
31 Proteins interacs with AT1G10170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT5G39410 | Predictedtwo hybridtwo hybrid | FSW = 0.0290
| Unknown | BINDING / CATALYTIC |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G27325 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | HYDROLASE ACTING ON ESTER BONDS |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34460 | Predictedtwo hybridtwo hybrid | FSW = 0.0063
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0070
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G57720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0278
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G01220 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G66760 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE |
AT3G23660 | Predictedtwo hybridtwo hybrid | FSW = 0.0595
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT5G54260 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0089
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G11790 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0257
| Unknown | UNKNOWN PROTEIN |
AT5G43670 | Predictedtwo hybrid | FSW = 0.0595
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT1G55540 | Predictedtwo hybridtwo hybrid | FSW = 0.0245
| Unknown | EMB1011 (EMBRYO DEFECTIVE 1011) |
AT4G37130 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G18230 | Predictedtwo hybridtwo hybrid | FSW = 0.0264
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT2G32600 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0078
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G25230 | Predictedtwo hybridinterologs mappingColocalizationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0202
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G27050 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR |
AT1G64140 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN SPERM CELL MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS LORICRIN-RELATED (TAIRAT5G645501) HAS 2298 BLAST HITS TO 1429 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 1626 FUNGI - 29 PLANTS - 243 VIRUSES - 9 OTHER EUKARYOTES - 349 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454