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AT2G01250 - ( 60S ribosomal protein L7 (RPL7B) )

94 Proteins interacs with AT2G01250

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G09570	Experimental two hybrid	FSW = 0.0090	Class B: vacuole plastid plasma membrane nucleus cytosol Class D: cytosol (p = 0.67)	CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT3G01280	Predicted Affinity Capture-MS	FSW = 0.0810	Class C: vacuole plastid plasma membrane	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G44120	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0588	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L7 (RPL7C)
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.1660	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G19910	Predicted two hybrid	FSW = 0.0057	Class C: vacuole plasma membrane	AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G24780	Predicted Affinity Capture-MS	FSW = 0.2398	Class C: vacuole	VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT3G62870	Predicted synthetic growth defect	FSW = 0.0292	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G26590	Predicted Affinity Capture-MS	FSW = 0.0117	Class C: vacuole	MATE EFFLUX FAMILY PROTEIN
AT1G14320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1337	Class C: vacuole	SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G65430	Predicted Affinity Capture-MS	FSW = 0.0331	Class C: plastid	GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G26970	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2361	Class C: plastid	ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G14590	Predicted two hybrid	FSW = 0.0204	Class C: plastid	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT3G48870	Predicted Affinity Capture-MS	FSW = 0.0063	Class C: plastid	HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G13580	Predicted Phylogenetic profile method Co-expression	FSW = 0.1757	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT4G23430	Predicted Affinity Capture-MS	FSW = 0.2173	Class C: plastid	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G06380	Predicted Affinity Capture-MS	FSW = 0.1002	Class C: plastid	RIBOSOMAL PROTEIN-RELATED
AT3G01610	Predicted Affinity Capture-MS	FSW = 0.0452	Class C: plasma membrane	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.0932	Class C: plasma membrane	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.2240	Class C: plasma membrane	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.0585	Class C: plasma membrane	RNA BINDING
AT2G21540	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.2934	Class C: plasma membrane	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1758	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT3G53870	Predicted two hybrid	FSW = 0.0429	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G59030	Predicted two hybrid	FSW = 0.0101	Class C: plasma membrane	COPT1 (COPPER TRANSPORTER 1) COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G26340	Predicted two hybrid	FSW = 0.0079	Class C: plasma membrane	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G20580	Predicted Affinity Capture-MS	FSW = 0.0513	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.1489	Class C: plasma membrane	ZINC ION BINDING
AT2G29990	Predicted Affinity Capture-MS	FSW = 0.2724	Unknown	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.1188	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G70580	Predicted Affinity Capture-MS	FSW = 0.0433	Unknown	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.0604	Unknown	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G80750	Predicted Phylogenetic profile method Co-expression	FSW = 0.0357	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7A)
AT2G47640	Predicted Affinity Capture-MS	FSW = 0.1047	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.0921	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT1G10300	Predicted Affinity Capture-MS	FSW = 0.1026	Unknown	GTP-BINDING PROTEIN-RELATED
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.0672	Unknown	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G15550	Predicted Affinity Capture-MS	FSW = 0.0919	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G55410	Predicted Affinity Capture-MS	FSW = 0.0167	Unknown	2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT1G34065	Predicted Affinity Capture-MS	FSW = 0.0204	Unknown	SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT4G26910	Predicted Affinity Capture-MS	FSW = 0.0255	Unknown	2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT3G10920	Predicted Affinity Capture-MS	FSW = 0.2087	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.1306	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT3G16050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2179	Unknown	A37 PROTEIN HETERODIMERIZATION
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.0152	Unknown	GLYCINE-RICH PROTEIN
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0096	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G27550	Predicted Affinity Capture-MS	FSW = 0.0974	Unknown	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING
AT4G17190	Predicted Affinity Capture-MS	FSW = 0.0322	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G22880	Predicted Affinity Capture-MS	FSW = 0.0736	Unknown	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.1401	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.2072	Unknown	UNKNOWN PROTEIN
AT1G26320	Predicted two hybrid	FSW = 0.0063	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.0885	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G43910	Predicted two hybrid	FSW = 0.0196	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.1047	Unknown	UNKNOWN PROTEIN
AT1G72340	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.0300	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT2G32050	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid co-fractionation Co-fractionation	FSW = 0.0777	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT4G14320	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0847	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT5G06130	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation	FSW = 0.0971	Unknown	CHAPERONE PROTEIN DNAJ-RELATED
AT2G01770	Predicted Affinity Capture-MS	FSW = 0.2541	Unknown	VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.3064	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G45080	Predicted Affinity Capture-MS	FSW = 0.2211	Unknown	CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE
AT3G08700	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0637	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G11900	Predicted Affinity Capture-MS	FSW = 0.2028	Unknown	ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G12200	Predicted Affinity Capture-MS	FSW = 0.0167	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.1319	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G49880	Predicted Affinity Capture-MS	FSW = 0.1888	Unknown	GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G51880	Predicted Affinity Capture-MS	FSW = 0.2175	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G53730	Predicted Affinity Capture-MS	FSW = 0.2328	Unknown	HISTONE H4
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.2084	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G25860	Predicted Affinity Capture-MS	FSW = 0.1601	Unknown	ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G35620	Predicted Affinity Capture-MS	FSW = 0.2521	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G37490	Predicted Affinity Capture-MS	FSW = 0.0136	Unknown	CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G16980	Predicted two hybrid	FSW = 0.0064	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17000	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1825	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2268	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G20060	Predicted Affinity Capture-MS	FSW = 0.1687	Unknown	PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G57890	Predicted Affinity Capture-MS	FSW = 0.1789	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.0273	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT3G13640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0215	Unknown	ATRLI1 TRANSPORTER
AT5G14520	Predicted Affinity Capture-MS Co-expression	FSW = 0.0875	Unknown	PESCADILLO-RELATED
AT4G11820	Predicted Affinity Capture-MS	FSW = 0.0215	Unknown	MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G01560	Predicted Affinity Capture-MS Co-expression	FSW = 0.0841	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0554	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G36930	Predicted Affinity Capture-MS	FSW = 0.0433	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G18220	Predicted Affinity Capture-MS	FSW = 0.0719	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT1G36730	Predicted Affinity Capture-MS	FSW = 0.0366	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G21160	Predicted Affinity Capture-MS	FSW = 0.0493	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G18830	Predicted Affinity Capture-MS	FSW = 0.0289	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G13160	Predicted Affinity Capture-MS	FSW = 0.0436	Unknown	SDA1 FAMILY PROTEIN
AT1G10170	Predicted Affinity Capture-MS	FSW = 0.0105	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G05520	Predicted Affinity Capture-MS	FSW = 0.0196	Unknown	TRANSPORT PROTEIN PUTATIVE
AT4G38630	Predicted two hybrid	FSW = 0.0092	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT3G27530	Predicted two hybrid	FSW = 0.0085	Unknown	GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G01250 - ( 60S ribosomal protein L7 (RPL7B) )

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