Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G09570 - ( CPK4 calmodulin-dependent protein kinase/ kinase/ protein kinase )
67 Proteins interacs with AT4G09570| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G56280
   | Experimentaltwo hybrid | FSW = 0.0741
| Class A:nucleusClass B:peroxisomecytosol | ATDI19 |
| AT2G01250
| Experimentaltwo hybrid | FSW = 0.0090
| Class B:vacuoleplastidplasma membranenucleuscytosolClass D:cytosol (p = 0.67) | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT3G22530
| Experimentaltwo hybrid | FSW = 0.0845
| Class B:vacuolenucleuscytosolClass D:cytosol (p = 0.67) | UNKNOWN PROTEIN |
| AT5G50920
| Experimentaltwo hybrid | FSW = 0.0176
| Class B:plastidnucleusmitochondrioncytosolClass D:plastid (p = 0.78) | CLPC1 ATP BINDING / ATP-DEPENDENT PEPTIDASE/ ATPASE |
| AT1G02280
| Experimentaltwo hybrid | FSW = 0.0317
| Class B:plastidnucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G13580
| Experimentaltwo hybrid | FSW = 0.0079
| Class B:plastidnucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT2G20890
| Experimentaltwo hybrid | FSW = 0.0461
| Class B:plastidnucleuscytosolClass D:plastid (p = 0.78) | PSB29 |
| AT3G54050
| Experimentaltwo hybrid | FSW = 0.0634
| Class B:plastidnucleuscytosolClass D:plastid (p = 0.78) | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
| ATCG00180 | Experimental | FSW = 0.0039
| Class B:plastidnucleuscytosol | RNA POLYMERASE BETA SUBUNIT-1 |
| AT5G03040
| Experimentaltwo hybrid | FSW = 0.0571
| Class B:plasma membranenucleuscytosolClass D:plastid (p = 0.78) | IQD2 (IQ-DOMAIN 2) CALMODULIN BINDING |
| AT1G76850
| Experimentaltwo hybrid | FSW = 0.0127
| Class B:plasma membranenucleuscytosol | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
| AT1G23080
| Experimentaltwo hybrid | FSW = 0.0563
| Class B:plasma membranenucleuscytosol | PIN7 (PIN-FORMED 7) AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ AUXINHYDROGEN SYMPORTER/ TRANSPORTER |
| AT3G30775
| Experimental | FSW = 0.0163
| Class B:nucleusmitochondrioncytosolClass D:plastid (p = 0.78) | ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE |
| AT1G02410
| Experimentaltwo hybrid | FSW = 0.0190
| Class B:nucleusmitochondrioncytosolClass D:plastid (p = 0.78) | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY |
| AT5G55660
| Experimental | FSW = 0.0571
| Class B:nucleusmitochondrioncytosol | LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G266302) HAS 348612 BLAST HITS TO 121147 PROTEINS IN 2910 SPECIES ARCHAE - 1231 BACTERIA - 38190 METAZOA - 148268 FUNGI - 42547 PLANTS - 15024 VIRUSES - 2447 OTHER EUKARYOTES - 100905 (SOURCE NCBI BLINK) |
| AT3G21160
| Experimentaltwo hybrid | FSW = 0.0381
| Class B:nucleusgolgicytosolClass D:plastid (p = 0.78) | MANNOSYL-OLIGOSACCHARIDE 12-ALPHA-MANNOSIDASE PUTATIVE |
| AT3G48360
| Experimentaltwo hybrid | FSW = 0.0461
| Unknown | BT2 (BTB AND TAZ DOMAIN PROTEIN 2) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT4G14830
| Experimentaltwo hybrid | FSW = 0.0845
| Unknown | UNKNOWN PROTEIN |
| AT5G21940
| Experimentaltwo hybrid | FSW = 0.0571
| Unknown | UNKNOWN PROTEIN |
| AT3G23820
| Experimentaltwo hybrid | FSW = 0.0571
| Unknown | GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6) UDP-GLUCURONATE 4-EPIMERASE/ CATALYTIC |
| AT5G43210
| Experimentaltwo hybrid | FSW = 0.0457
| Unknown | ENDO/EXCINUCLEASE AMINO TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G03850
| Experimental | FSW = 0.0135
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT3G26510
| Experimentaltwo hybrid | FSW = 0.0845
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
| AT3G42800
| Experimentaltwo hybrid | FSW = 0.0571
| Unknown | UNKNOWN PROTEIN |
| AT2G26640
| Experimentaltwo hybrid | FSW = 0.0457
| Unknown | KCS11 (3-KETOACYL-COA SYNTHASE 11) ACYLTRANSFERASE/ CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
| AT2G36420
| Experimentaltwo hybrid | FSW = 0.0571
| Unknown | UNKNOWN PROTEIN |
| AT3G11960
| Experimentaltwo hybrid | FSW = 0.0571
| Unknown | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT3G20290
| Experimentaltwo hybrid | FSW = 0.0457
| Unknown | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) GTP BINDING / GTPASE/ CALCIUM ION BINDING |
| AT3G21090
| Experimentaltwo hybrid | FSW = 0.0286
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT4G32070
| Experimentaltwo hybrid | FSW = 0.0457
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN / TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT2G21620
| Experimental | FSW = 0.0135
| Unknown | RD2 |
| AT4G32530
| Experimental | FSW = 0.0158
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
| AT2G22910
| Experimentaltwo hybrid | FSW = 0.0724
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN / AMINO ACID KINASE FAMILY PROTEIN |
| AT1G35670
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4751
| Class C:nucleuscytosol | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT4G23650
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3788
| Class C:nucleuscytosol | CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.0052
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT5G62880
| PredictedAffinity Capture-MS | FSW = 0.0025
| Class C:nucleus | ARAC10 GTP BINDING |
| AT1G02780
| PredictedAffinity Capture-MS | FSW = 0.0039
| Class C:nucleus | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G51850
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4435
| Unknown | CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0180
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G74740
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3636
| Unknown | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
| AT4G34230
| PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
| AT3G57530
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3247
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT5G12480
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1554
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G19450
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3359
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G66210
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4404
| Unknown | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G17890
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4435
| Unknown | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04720
| PredictedPhylogenetic profile method | FSW = 0.1852
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G47160
| PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
| AT1G61950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4132
| Unknown | CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G46900
| PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT3G45190
| PredictedPhenotypic Suppression | FSW = 0.0329
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT1G27040
| PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | NITRATE TRANSPORTER PUTATIVE |
| AT1G53900
| PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT3G02000
| PredictedPhenotypic Enhancement | FSW = 0.0146
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G27060
| PredictedPhenotypic Enhancement | FSW = 0.0164
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G47080
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
| AT4G10480
| Predictedinterologs mapping | FSW = 0.0278
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
| AT1G07270
| Predictedin vitroin vivo | FSW = 0.0036
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT5G23580
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4780
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G36070
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2872
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G12180
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4545
| Unknown | CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G19360
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3097
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G41860
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3740
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G50700
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4228
| Unknown | CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04700
| PredictedPhylogenetic profile method | FSW = 0.1828
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G04695
| PredictedPhylogenetic profile method | FSW = 0.1586
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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