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AT3G49910 - ( 60S ribosomal protein L26 (RPL26A) )

93 Proteins interacs with AT3G49910

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.3916	Class C: vacuole plastid plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.2989	Class C: vacuole plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2240	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4974	Class C: vacuole plastid plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.1878	Class C: vacuole plastid plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G36160	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4082	Class C: vacuole plastid plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3115	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3391	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5067	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.4756	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3819	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G12580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1958	Class C: vacuole plasma membrane	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3286	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2898	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2766	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G13080	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1653	Class C: vacuole	ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.4185	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2095	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G18540	Predicted Affinity Capture-MS	FSW = 0.3170	Class C: plastid plasma membrane	60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4288	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.4638	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G20390	Predicted Affinity Capture-MS	FSW = 0.2166	Class C: plastid	ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G31170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2048	Class C: plastid	SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G21640	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2434	Class C: plastid	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G19160	Predicted Affinity Capture-MS	FSW = 0.1693	Class C: plastid	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.2977	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G18870	Predicted Affinity Capture-MS	FSW = 0.0074	Class C: plastid	ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT5G20010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2739	Class C: plasma membrane nucleus	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4309	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4738	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3317	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G61430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2399	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G55690	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1369	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G63290	Predicted Affinity Capture-MS	FSW = 0.3923	Class C: plasma membrane	RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250	Predicted Affinity Capture-MS	FSW = 0.1753	Class C: plasma membrane	SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4823	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.3923	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G20760	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2211	Class C: plasma membrane	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.5038	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.4558	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT3G43810	Predicted Reconstituted Complex interaction prediction	FSW = 0.0017	Class C: plasma membrane	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT5G19990	Predicted Affinity Capture-MS	FSW = 0.0087	Class C: plasma membrane	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G66410	Predicted Reconstituted Complex	FSW = 0.0033	Class C: plasma membrane	CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1425	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3856	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2761	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G35310	Predicted Affinity Capture-MS	FSW = 0.2878	Class C: plasma membrane	CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3558	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT4G09570	Predicted Affinity Capture-MS	FSW = 0.0052	Class C: nucleus	CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.1206	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G74060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.6562	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.3829	Class C: nucleus	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1709	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4118	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.3010	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G15520	Predicted Affinity Capture-MS	FSW = 0.1469	Class C: nucleus	40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.1894	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G19310	Predicted Affinity Capture-MS	FSW = 0.0103	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3034	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.3237	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT2G18450	Predicted Affinity Capture-MS	FSW = 0.1928	Unknown	SDH1-2 SUCCINATE DEHYDROGENASE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3725	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT3G56340	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3153	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4756	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT3G46220	Predicted two hybrid two hybrid	FSW = 0.0348	Unknown	UNKNOWN PROTEIN
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.0527	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G54290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2275	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G37540	Predicted Affinity Capture-MS	FSW = 0.2715	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G11270	Predicted two hybrid	FSW = 0.0104	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G15470	Predicted Affinity Capture-MS	FSW = 0.0148	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.4689	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3221	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.0713	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G22240	Predicted Affinity Capture-MS	FSW = 0.2160	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.3427	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G60680	Predicted Affinity Capture-MS	FSW = 0.0068	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G03040	Predicted Affinity Capture-MS	FSW = 0.1910	Unknown	TRANSMEMBRANE PROTEIN-RELATED
AT2G16090	Predicted Affinity Capture-MS	FSW = 0.3213	Unknown	ZINC FINGER PROTEIN-RELATED
AT2G16740	Predicted Affinity Capture-MS	FSW = 0.1522	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.3426	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT4G36800	Predicted Affinity Capture-MS	FSW = 0.2839	Unknown	RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0524	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G06420	Predicted Affinity Capture-MS	FSW = 0.2556	Unknown	ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G13860	Predicted Affinity Capture-MS	FSW = 0.0021	Unknown	ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G16750	Predicted Affinity Capture-MS	FSW = 0.1945	Unknown	TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G46150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2104	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G66620	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING
AT3G55020	Predicted Affinity Capture-MS	FSW = 0.0098	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3982	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G26510	Predicted Affinity Capture-MS	FSW = 0.0318	Unknown	ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.1883	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT5G67510	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0363	Unknown	60S RIBOSOMAL PROTEIN L26 (RPL26B)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G49910 - ( 60S ribosomal protein L26 (RPL26A) )

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