Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36800 - ( RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 ligase/ small conjugating protein ligase )
48 Proteins interacs with AT4G36800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20570 | ExperimentalReconstituted Complexpull downcoimmunoprecipitation | FSW = 0.0205
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT4G02570 | ExperimentalAffinity Capture-Western | FSW = 0.0191
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT1G05180 | ExperimentalAffinity Capture-Western | FSW = 0.0294
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT3G62980 | Experimentalpull downReconstituted Complex | FSW = 0.0503
| Unknown | TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G03190 | ExperimentalReconstituted Complex | FSW = 0.0577
| Unknown | GRH1 (GRR1-LIKE PROTEIN 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.2839
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5208
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2646
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5256
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.5776
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.1883
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.3672
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4540
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT4G18440 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.5651
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4861
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.3808
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.6158
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT3G06270 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2356
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MS | FSW = 0.5357
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.5842
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G32410 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | AXL (AXR1-LIKE) BINDING / CATALYTIC |
AT5G19180 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2561
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4551
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | PSF2 |
AT1G11980 | Predictedin vitroin vivo | FSW = 0.0863
| Unknown | RUB3 (UBIQUITIN-RELATED PROTEIN 3) |
AT3G54180 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G12730 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.3426
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.5460
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.2870
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.4593
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.6794
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2832
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2711
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.2980
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.3669
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.6033
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.4391
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2504
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2645
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4786
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4289
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454