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AT3G61430 - ( PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) water channel )

84 Proteins interacs with AT3G61430

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G12580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2730	Class C: plasma membrane mitochondrion	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT3G26520	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.3933	Class C: plasma membrane	TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G49910	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2399	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G37170	Predicted Shared biological function Phylogenetic profile method	FSW = 0.3401	Class C: plasma membrane	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT2G36160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4230	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT4G35100	Predicted Phylogenetic profile method	FSW = 0.3717	Class C: plasma membrane	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL
AT2G39010	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.3401	Class C: plasma membrane	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT3G56190	Predicted Affinity Capture-Western	FSW = 0.0561	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G53420	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.3085	Class C: plasma membrane	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT1G18540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4830	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT2G45960	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.2578	Class C: plasma membrane	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G01620	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3465	Class C: plasma membrane	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT5G20010	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4253	Class C: plasma membrane	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G45420	Predicted Affinity Capture-Western	FSW = 0.1273	Class C: plasma membrane	MYB FAMILY TRANSCRIPTION FACTOR
AT3G09740	Predicted Affinity Capture-MS	FSW = 0.2677	Class C: plasma membrane	SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT1G63290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.5355	Class C: plasma membrane	RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G55690	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-Western	FSW = 0.1956	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G11250	Predicted Affinity Capture-MS	FSW = 0.3113	Class C: plasma membrane	SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT4G23400	Predicted Phylogenetic profile method Co-expression	FSW = 0.3560	Class C: plasma membrane	PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT5G60660	Predicted Phylogenetic profile method Co-expression	FSW = 0.3226	Class C: plasma membrane	PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT4G00430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.4021	Class C: plasma membrane	PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT2G37180	Predicted Shared biological function Phylogenetic profile method	FSW = 0.3333	Class C: plasma membrane	RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT2G16850	Predicted Phylogenetic profile method	FSW = 0.3467	Class C: plasma membrane	PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.2628	Class C: plasma membrane	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT4G18910	Predicted Phylogenetic profile method Co-expression	FSW = 0.2284	Class C: plasma membrane	NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G20760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4808	Class C: plasma membrane	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G35310	Predicted Affinity Capture-MS	FSW = 0.5100	Class C: plasma membrane	CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G08950	Predicted Affinity Capture-Western	FSW = 0.1424	Class C: mitochondrion	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G31170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.3849	Class C: mitochondrion	SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G18450	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.4357	Class C: mitochondrion	SDH1-2 SUCCINATE DEHYDROGENASE
AT2G25810	Predicted Phylogenetic profile method Co-expression	FSW = 0.3628	Unknown	TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830	Predicted Phylogenetic profile method Co-expression	FSW = 0.3628	Unknown	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G13080	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.2280	Unknown	ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G62870	Predicted Affinity Capture-MS	FSW = 0.0219	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G20390	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.4420	Unknown	ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT5G24400	Predicted Affinity Capture-MS	FSW = 0.3227	Unknown	EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.0905	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G21640	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.3666	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G19160	Predicted Affinity Capture-MS	FSW = 0.2966	Unknown	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT3G06040	Predicted Affinity Capture-Western	FSW = 0.0972	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G30260	Predicted Affinity Capture-MS	FSW = 0.0399	Unknown	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G74060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2071	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2994	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT2G23460	Predicted Affinity Capture-MS	FSW = 0.3175	Unknown	XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G33110	Predicted Affinity Capture-MS	FSW = 0.0931	Unknown	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.1863	Unknown	A37 PROTEIN HETERODIMERIZATION
AT1G17810	Predicted Phylogenetic profile method Co-expression	FSW = 0.1793	Unknown	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820	Predicted Phylogenetic profile method	FSW = 0.2375	Unknown	NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT3G54820	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2419	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G19030	Predicted Phylogenetic profile method Co-expression	FSW = 0.2375	Unknown	NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G31885	Predicted Phylogenetic profile method	FSW = 0.2375	Unknown	TRANSPORTER
AT3G47440	Predicted Phylogenetic profile method	FSW = 0.3698	Unknown	TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.3230	Unknown	PSF2
AT1G54290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3403	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G03040	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.3879	Unknown	TRANSMEMBRANE PROTEIN-RELATED
AT2G16090	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS	FSW = 0.4920	Unknown	ZINC FINGER PROTEIN-RELATED
AT2G27340	Predicted Affinity Capture-Western	FSW = 0.0195	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G37540	Predicted Affinity Capture-MS	FSW = 0.4102	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G03590	Predicted Affinity Capture-MS	FSW = 0.2299	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G47940	Predicted Affinity Capture-MS	FSW = 0.2420	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G58490	Predicted Affinity Capture-Western	FSW = 0.0074	Unknown	PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN
AT1G05910	Predicted Affinity Capture-Western	FSW = 0.0752	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.2250	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT2G16740	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3258	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.1414	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT3G05540	Predicted Affinity Capture-Western	FSW = 0.0519	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.0899	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.2996	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G52390	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.2130	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G57140	Predicted Affinity Capture-MS	FSW = 0.0156	Unknown	PATATIN-RELATED
AT3G57550	Predicted Affinity Capture-Western	FSW = 0.0826	Unknown	AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT4G12440	Predicted Affinity Capture-MS	FSW = 0.0633	Unknown	ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.0300	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G36800	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.4861	Unknown	RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT4G39330	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.2974	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G17000	Predicted Affinity Capture-MS	FSW = 0.2102	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G24410	Predicted Affinity Capture-MS	FSW = 0.0586	Unknown	GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G46150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4688	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2765	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G06420	Predicted Affinity Capture-MS	FSW = 0.4630	Unknown	ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750	Predicted Affinity Capture-MS	FSW = 0.2907	Unknown	TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G37850	Predicted Affinity Capture-MS	FSW = 0.4274	Unknown	SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.1459	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.4268	Unknown	WD-40 REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G61430 - ( PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) water channel )

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