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AT2G45960 - ( PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) water channel )

52 Proteins interacs with AT2G45960

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G26090	Experimental pull down Affinity Capture-MS affinity technology	FSW = 0.0194	Unknown	RPS2 (RESISTANT TO P SYRINGAE 2) PROTEIN BINDING
AT2G01830	Experimental two hybrid	FSW = 0.0036	Unknown	WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT3G26520	Predicted Shared biological function Phylogenetic profile method	FSW = 0.5612	Class C: plastid plasma membrane	TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT2G37170	Predicted Shared biological function Phylogenetic profile method	FSW = 0.4933	Class C: plastid plasma membrane	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G53420	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.4149	Class C: plastid plasma membrane	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT1G01620	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.4375	Class C: plastid plasma membrane	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT3G62030	Predicted Affinity Capture-MS	FSW = 0.0214	Class C: plastid	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT2G45300	Predicted Affinity Capture-MS	FSW = 0.0447	Class C: plastid	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT4G35100	Predicted Phylogenetic profile method	FSW = 0.5346	Class C: plasma membrane	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL
AT2G39010	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.4933	Class C: plasma membrane	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT3G61430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.2578	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G78000	Predicted interologs mapping interologs mapping	FSW = 0.0242	Class C: plasma membrane	SULTR12 (SULFATE TRANSPORTER 12) SULFATE TRANSMEMBRANE TRANSPORTER
AT4G23400	Predicted Phylogenetic profile method Co-expression	FSW = 0.5142	Class C: plasma membrane	PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT4G00430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.5736	Class C: plasma membrane	PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT5G60660	Predicted Phylogenetic profile method Co-expression	FSW = 0.4680	Class C: plasma membrane	PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT2G37180	Predicted Shared biological function Phylogenetic profile method	FSW = 0.4857	Class C: plasma membrane	RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT2G16850	Predicted Phylogenetic profile method	FSW = 0.4663	Class C: plasma membrane	PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT4G18910	Predicted Phylogenetic profile method Co-expression	FSW = 0.3408	Class C: plasma membrane	NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT5G58800	Predicted Affinity Capture-MS	FSW = 0.0083	Class C: plasma membrane	QUINONE REDUCTASE FAMILY PROTEIN
AT4G18800	Predicted Affinity Capture-Western Synthetic Rescue interologs mapping	FSW = 0.0185	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT2G25810	Predicted Phylogenetic profile method Co-expression	FSW = 0.5219	Unknown	TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830	Predicted Phylogenetic profile method Co-expression	FSW = 0.5219	Unknown	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G26590	Predicted biochemical	FSW = 0.0199	Unknown	MATE EFFLUX FAMILY PROTEIN
AT5G10350	Predicted Affinity Capture-MS Synthetic Lethality Reconstituted Complex two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS far western blotting Affinity Capture-MS Affinity Capture-Western Reconstituted Complex biochemical Synthetic Lethality interologs mapping	FSW = 0.0813	Unknown	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G48880	Predicted Synthetic Rescue	FSW = 0.0507	Unknown	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G04460	Predicted interologs mapping interologs mapping	FSW = 0.0610	Unknown	PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.0081	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT4G18880	Predicted Synthetic Lethality	FSW = 0.0069	Unknown	AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT5G47630	Predicted Affinity Capture-MS interologs mapping	FSW = 0.0163	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G18450	Predicted Affinity Capture-MS	FSW = 0.0064	Unknown	SDH1-2 SUCCINATE DEHYDROGENASE
AT1G17810	Predicted Phylogenetic profile method Co-expression	FSW = 0.2967	Unknown	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820	Predicted Phylogenetic profile method	FSW = 0.3545	Unknown	NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT3G54820	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3235	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G19030	Predicted Phylogenetic profile method Co-expression	FSW = 0.3545	Unknown	NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G31885	Predicted Phylogenetic profile method	FSW = 0.3545	Unknown	TRANSPORTER
AT3G47440	Predicted Phylogenetic profile method Co-expression	FSW = 0.5297	Unknown	TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G07340	Predicted Affinity Capture-MS	FSW = 0.0332	Unknown	ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12730	Predicted Affinity Capture-MS	FSW = 0.0416	Unknown	CELL DIVISION CYCLE PROTEIN-RELATED
AT1G13580	Predicted Phenotypic Enhancement	FSW = 0.0921	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT2G23030	Predicted interologs mapping interologs mapping interologs mapping	FSW = 0.0485	Unknown	SNRK29 (SNF1-RELATED PROTEIN KINASE 29) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G33560	Predicted Affinity Capture-MS	FSW = 0.0488	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G40010	Predicted Affinity Capture-MS interologs mapping	FSW = 0.0184	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G06470	Predicted biochemical	FSW = 0.0694	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G14240	Predicted biochemical	FSW = 0.0077	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G14180	Predicted Phenotypic Enhancement	FSW = 0.0886	Unknown	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT3G09640	Predicted Affinity Capture-MS	FSW = 0.0518	Unknown	APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G21460	Predicted Phenotypic Suppression Phenotypic Enhancement	FSW = 0.0480	Unknown	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT4G21480	Predicted Affinity Capture-MS	FSW = 0.0216	Unknown	CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G38250	Predicted Synthetic Rescue	FSW = 0.0480	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G37830	Predicted Affinity Capture-MS	FSW = 0.0100	Unknown	OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G54800	Predicted Affinity Capture-MS	FSW = 0.0268	Unknown	GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G45960 - ( PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) water channel )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite