Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04460 - ( PEX12 protein binding / zinc ion binding )
33 Proteins interacs with AT3G04460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G68010 | Experimentalconfocal microscopyinteraction detection method | FSW = 0.0885
| Class A:peroxisomeClass B:plasma membraneClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | HPR GLYCERATE DEHYDROGENASE/ POLY(U) BINDING |
AT1G29260 | Experimentalinteraction detection method | FSW = 0.0827
| Class A:peroxisomeClass D:mitochondrion (p = 0.82) | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT1G75950 | Experimental | FSW = 0.0210
| Class B:plasma membraneperoxisomenucleuscytosol | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | Experimental | FSW = 0.0254
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34210 | Experimental | FSW = 0.0450
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60010 | Experimental | FSW = 0.0557
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G26350 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vivoin vitroin vitroCo-purificationAffinity Capture-Westerninteraction prediction | FSW = 0.3425
| Class C:peroxisome | PEX10 PROTEIN BINDING / ZINC ION BINDING |
AT5G56290 | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1377
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G17550 | Predictedtwo hybridin vivoin vitrotwo hybrid | FSW = 0.0543
| Class C:peroxisome | PEX19-2 |
AT3G03490 | Predictedtwo hybridinteraction prediction | FSW = 0.0675
| Class C:peroxisome | PEX19-1 (PEROXIN 19-1) |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedProtein-peptideSynthetic LethalityReconstituted Complexbiochemical | FSW = 0.1588
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G45960 | Predictedinterologs mappinginterologs mapping | FSW = 0.0610
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT2G45300 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0644
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G10070 | Predictedtwo hybrid | FSW = 0.0531
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G23900 | Predictedinterologs mapping | FSW = 0.0583
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT2G32670 | Predictedsynthetic growth defect | FSW = 0.1563
| Unknown | ATVAMP725 |
AT4G25340 | Predictedsynthetic growth defect | FSW = 0.0877
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G18480 | PredictedSynthetic Lethality | FSW = 0.1070
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT3G60360 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1509
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.0747
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G13580 | PredictedSynthetic Lethality | FSW = 0.0867
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G75290 | Predictedsynthetic growth defect | FSW = 0.0347
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT1G29970 | Predictedsynthetic growth defect | FSW = 0.1092
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0216
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G34180 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G06483 | PredictedSynthetic Lethality | FSW = 0.1273
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G62760 | PredictedReconstituted Complex | FSW = 0.1346
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0198
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G14180 | Predictedsynthetic growth defect | FSW = 0.1252
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G67540 | PredictedSynthetic Lethality | FSW = 0.1061
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0571
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454