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AT5G42190 - ( ASK2 (ARABIDOPSIS SKP1-LIKE 2) protein binding / ubiquitin-protein ligase )

180 Proteins interacs with AT5G42190

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G75950	Experimental Affinity Capture-Western	FSW = 0.4819	Unknown	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G25280	Experimental	FSW = 0.0205	Unknown	ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR
AT2G38440	Experimental	FSW = 0.0055	Unknown	SCAR2 (SCAR HOMOLOG 2)
AT3G04460	Experimental	FSW = 0.0254	Unknown	PEX12 PROTEIN BINDING / ZINC ION BINDING
AT5G57360	Experimental two hybrid	FSW = 0.1209	Unknown	ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G24540	Experimental pull down	FSW = 0.0138	Unknown	AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G18915	Experimental two hybrid	FSW = 0.0586	Unknown	LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G09700	Experimental pull down	FSW = 0.0115	Unknown	HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING
AT4G02440	Experimental two hybrid two hybrid fluorescence acceptor donor pair two hybrid Reconstituted Complex in vitro fluorescence acceptor donor pair	FSW = 0.0916	Unknown	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE
AT1G80110	Experimental two hybrid	FSW = 0.0326	Unknown	ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) CARBOHYDRATE BINDING
AT1G67340	Experimental	FSW = 0.0399	Unknown	ZINC FINGER (MYND TYPE) FAMILY PROTEIN / F-BOX FAMILY PROTEIN
AT1G43700	Experimental	FSW = 0.0093	Unknown	VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G30950	Experimental two hybrid two hybrid two hybrid	FSW = 0.1120	Unknown	UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25490	Experimental two hybrid two hybrid two hybrid	FSW = 0.0299	Unknown	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G20570	Experimental Affinity Capture-Western	FSW = 0.0512	Unknown	RBX1 (RING-BOX 1) PROTEIN BINDING
AT4G02570	Experimental two hybrid Affinity Capture-Western two hybrid	FSW = 0.1628	Unknown	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT5G25350	Experimental	FSW = 0.0303	Unknown	EBF2 (EIN3-BINDING F BOX PROTEIN 2) PROTEIN BINDING
AT2G39940	Experimental two hybrid Affinity Capture-Western two hybrid two hybrid Affinity Capture-Western coimmunoprecipitation	FSW = 0.0410	Unknown	COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G68050	Experimental two hybrid two hybrid	FSW = 0.0609	Unknown	FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE
AT3G61590	Experimental two hybrid	FSW = 0.1008	Unknown	HWS (HAWAIIAN SKIRT) UBIQUITIN-PROTEIN LIGASE
AT5G49610	Experimental two hybrid	FSW = 0.0640	Unknown	F-BOX FAMILY PROTEIN
AT2G02360	Experimental two hybrid	FSW = 0.0384	Unknown	ATPP2-B10 (PHLOEM PROTEIN 2-B10) CARBOHYDRATE BINDING
AT4G21510	Experimental two hybrid	FSW = 0.0326	Unknown	F-BOX FAMILY PROTEIN
AT2G01620	Experimental two hybrid	FSW = 0.0952	Unknown	MEE11 (MATERNAL EFFECT EMBRYO ARREST 11)
AT2G24540	Experimental	FSW = 0.0206	Unknown	AFR (ATTENUATED FAR-RED RESPONSE)
AT3G63220	Experimental	FSW = 0.0245	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT2G21950	Experimental	FSW = 0.0247	Unknown	SKIP6 (SKP1 INTERACTING PARTNER 6) UBIQUITIN-PROTEIN LIGASE
AT3G61060	Experimental two hybrid	FSW = 0.0695	Unknown	ATPP2-A13 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A13) CARBOHYDRATE BINDING
AT1G63090	Experimental	FSW = 0.0245	Unknown	ATPP2-A11 (PHLOEM PROTEIN 2-A11) CARBOHYDRATE BINDING
AT2G02870	Experimental two hybrid	FSW = 0.0245	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT5G52120	Experimental two hybrid	FSW = 0.0947	Unknown	ATPP2-A14 (PHLOEM PROTEIN 2-A14) CARBOHYDRATE BINDING
AT3G26000	Experimental two hybrid	FSW = 0.0847	Unknown	F-BOX FAMILY PROTEIN
AT4G05460	Experimental two hybrid	FSW = 0.0538	Unknown	F-BOX FAMILY PROTEIN (FBL20)
AT4G08980	Experimental two hybrid	FSW = 0.0474	Unknown	F-BOX FAMILY PROTEIN (FBW2)
AT4G02740	Experimental two hybrid	FSW = 0.0916	Unknown	CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G027602) HAS 1691 BLAST HITS TO 1200 PROTEINS IN 170 SPECIES ARCHAE - 2 BACTERIA - 109 METAZOA - 687 FUNGI - 197 PLANTS - 199 VIRUSES - 23 OTHER EUKARYOTES - 474 (SOURCE NCBI BLINK)
AT1G06110	Experimental two hybrid two hybrid	FSW = 0.0399	Unknown	SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) PROTEIN BINDING
AT1G76920	Experimental two hybrid	FSW = 0.0314	Unknown	F-BOX FAMILY PROTEIN (FBX3)
AT3G59940	Experimental two hybrid	FSW = 0.0326	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT2G02230	Experimental two hybrid	FSW = 0.0245	Unknown	ATPP2-B1 (PHLOEM PROTEIN 2-B1) CARBOHYDRATE BINDING
AT1G23780	Experimental two hybrid	FSW = 0.0280	Unknown	F-BOX FAMILY PROTEIN
AT5G45360	Experimental two hybrid	FSW = 0.0326	Unknown	F-BOX FAMILY PROTEIN
AT1G21760	Experimental	FSW = 0.0292	Unknown	FBP7 (F-BOX PROTEIN 7)
AT2G04550	Experimental	FSW = 0.0288	Unknown	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE
AT3G59910	Experimental	FSW = 0.0280	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ANKYRIN (INTERPROIPR002110) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G440902) HAS 43 BLAST HITS TO 43 PROTEINS IN 10 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 40 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT3G62980	Experimental two hybrid two hybrid Affinity Capture-Western	FSW = 0.0386	Unknown	TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G57900	Experimental two hybrid	FSW = 0.0432	Unknown	SKIP1 (SKP1 INTERACTING PARTNER 1) PROTEIN BINDING
AT5G67250	Experimental	FSW = 0.0198	Unknown	SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2) UBIQUITIN-PROTEIN LIGASE
AT1G78100	Experimental	FSW = 0.0292	Unknown	F-BOX FAMILY PROTEIN
AT1G55000	Experimental	FSW = 0.0399	Unknown	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN
AT4G38940	Experimental	FSW = 0.0401	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT4G24210	Experimental Affinity Capture-Western	FSW = 0.0775	Unknown	SLY1 (SLEEPY1)
AT5G48170	Experimental two hybrid	FSW = 0.0745	Unknown	SLY2 (SLEEPY2)
AT1G27340	Experimental two hybrid	FSW = 0.0640	Unknown	F-BOX FAMILY PROTEIN
AT1G08710	Experimental two hybrid	FSW = 0.0326	Unknown	F-BOX FAMILY PROTEIN
AT1G31350	Experimental	FSW = 0.0326	Unknown	F-BOX FAMILY PROTEIN
AT4G03190	Experimental two hybrid	FSW = 0.0405	Unknown	GRH1 (GRR1-LIKE PROTEIN 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
YJR090C	Experimental two hybrid	FSW = 0.0119	Unknown	GRH1 (GRR1-LIKE PROTEIN 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G12560	Experimental two hybrid protein complementation assay	FSW = 0.1194	Unknown	F-BOX FAMILY PROTEIN
AT5G13490	Predicted Affinity Capture-MS	FSW = 0.0058	Unknown	AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0063	Unknown	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT1G79550	Predicted Phenotypic Enhancement	FSW = 0.0682	Unknown	PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT1G78900	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0191	Unknown	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G76030	Predicted Affinity Capture-Western Affinity Capture-MS interaction prediction	FSW = 0.0227	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT1G56070	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0075	Unknown	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G12580	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.0016	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.0038	Unknown	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G58730	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0436	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT5G11980	Predicted two hybrid	FSW = 0.0288	Unknown	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT-RELATED / COG COMPLEX COMPONENT-RELATED
AT2G46560	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS	FSW = 0.0521	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G62870	Predicted two hybrid synthetic growth defect	FSW = 0.0086	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800	Predicted Affinity Capture-Western	FSW = 0.0117	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G19860	Predicted Phenotypic Enhancement	FSW = 0.0168	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G14850	Predicted two hybrid	FSW = 0.0157	Unknown	NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT3G02520	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G20550	Predicted co-fractionation Co-fractionation	FSW = 0.0335	Unknown	DDL (DAWDLE)
AT1G22170	Predicted Affinity Capture-MS	FSW = 0.0022	Unknown	PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G31230	Predicted synthetic growth defect	FSW = 0.0299	Unknown	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) ASPARTATE KINASE/ HOMOSERINE DEHYDROGENASE
AT3G06530	Predicted two hybrid two hybrid	FSW = 0.0108	Unknown	BINDING
AT5G63980	Predicted Synthetic Lethality	FSW = 0.0071	Unknown	SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0324	Unknown	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G38480	Predicted Affinity Capture-MS	FSW = 0.0160	Unknown	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G45710	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT3G05560	Predicted Phenotypic Enhancement	FSW = 0.0476	Unknown	60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT3G17390	Predicted Affinity Capture-MS	FSW = 0.0077	Unknown	MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT5G42740	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC)
AT5G52640	Predicted Affinity Capture-Western Synthetic Lethality interaction prediction	FSW = 0.0177	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G06530	Predicted two hybrid	FSW = 0.0073	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT5G12480	Predicted biochemical	FSW = 0.0129	Unknown	CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G58800	Predicted Phenotypic Enhancement	FSW = 0.0487	Unknown	QUINONE REDUCTASE FAMILY PROTEIN
AT4G19690	Predicted co-fractionation Co-fractionation	FSW = 0.0515	Unknown	IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G30070	Predicted Affinity Capture-MS in vivo in vitro two hybrid	FSW = 0.0538	Unknown	SGS DOMAIN-CONTAINING PROTEIN
AT1G57720	Predicted Affinity Capture-MS	FSW = 0.0193	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G38740	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G32410	Predicted Synthetic Lethality	FSW = 0.0231	Unknown	AXL (AXR1-LIKE) BINDING / CATALYTIC
AT2G17520	Predicted biochemical	FSW = 0.0037	Unknown	IRE1A ENDORIBONUCLEASE/ KINASE
AT4G07950	Predicted two hybrid	FSW = 0.0031	Unknown	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT1G47210	Predicted in vivo	FSW = 0.0109	Unknown	CYCLIN FAMILY PROTEIN
AT1G17790	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0021	Unknown	DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT3G60350	Predicted two hybrid	FSW = 0.0219	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN
AT2G36170	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT2G29570	Predicted two hybrid	FSW = 0.0132	Unknown	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G20140	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2738	Unknown	ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G23570	Predicted interaction prediction Reconstituted Complex interologs mapping Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Reconstituted Complex two hybrid Reconstituted Complex Affinity Capture-MS two hybrid interologs mapping	FSW = 0.0385	Unknown	SGT1A PROTEIN BINDING
AT3G60020	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1805	Unknown	ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G26780	Predicted Affinity Capture-MS	FSW = 0.0144	Unknown	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT2G20420	Predicted two hybrid two hybrid	FSW = 0.0036	Unknown	SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G08380	Predicted two hybrid	FSW = 0.0112	Unknown	ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT2G31200	Predicted Affinity Capture-MS	FSW = 0.0117	Unknown	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT5G18380	Predicted two hybrid	FSW = 0.0035	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G10330	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT3G25980	Predicted Synthetic Lethality	FSW = 0.0163	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT3G56340	Predicted two hybrid	FSW = 0.0193	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT5G20850	Predicted two hybrid	FSW = 0.0121	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G53360	Predicted in vivo Affinity Capture-MS	FSW = 0.0067	Unknown	SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT3G11710	Predicted Affinity Capture-MS	FSW = 0.0046	Unknown	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G71840	Predicted two hybrid two hybrid two hybrid in vitro Affinity Capture-Western	FSW = 0.0051	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G12280	Predicted Phenotypic Enhancement	FSW = 0.0058	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT4G00660	Predicted two hybrid	FSW = 0.0037	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G05730	Predicted two hybrid	FSW = 0.0288	Unknown	UNKNOWN PROTEIN
AT1G08290	Predicted two hybrid	FSW = 0.0046	Unknown	ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3)
AT1G15740	Predicted two hybrid two hybrid	FSW = 0.0326	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G16350	Predicted two hybrid	FSW = 0.0135	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G17720	Predicted two hybrid	FSW = 0.0143	Unknown	ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G35530	Predicted two hybrid	FSW = 0.0133	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G43720	Predicted two hybrid	FSW = 0.0288	Unknown	UNKNOWN PROTEIN
AT2G47350	Predicted two hybrid two hybrid	FSW = 0.0051	Unknown	PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN
AT3G07550	Predicted two hybrid two hybrid Enriched domain pair Co-expression	FSW = 0.0199	Unknown	F-BOX FAMILY PROTEIN (FBL12)
AT3G14250	Predicted two hybrid	FSW = 0.0146	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT4G16570	Predicted two hybrid two hybrid	FSW = 0.0175	Unknown	PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7) METHYLTRANSFERASE
AT4G24740	Predicted two hybrid	FSW = 0.0220	Unknown	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT4G32660	Predicted two hybrid	FSW = 0.0214	Unknown	AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G10810	Predicted two hybrid two hybrid	FSW = 0.0103	Unknown	ATER
AT5G41770	Predicted two hybrid two hybrid	FSW = 0.0064	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G27320	Predicted two hybrid	FSW = 0.0109	Unknown	GID1C (GA INSENSITIVE DWARF1C) HYDROLASE
AT5G38640	Predicted two hybrid	FSW = 0.0140	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT5G53770	Predicted two hybrid two hybrid	FSW = 0.0057	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G59850	Predicted two hybrid	FSW = 0.0063	Unknown	40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT4G15475	Predicted in vivo in vitro Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western two hybrid Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western two hybrid Reconstituted Complex two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western Reconstituted Complex interologs mapping interologs mapping Enriched domain pair Co-expression	FSW = 0.0193	Unknown	F-BOX FAMILY PROTEIN (FBL4)
AT5G27920	Predicted in vivo in vitro Affinity Capture-MS	FSW = 0.0175	Unknown	F-BOX FAMILY PROTEIN
AT3G58040	Predicted in vivo Affinity Capture-MS	FSW = 0.0173	Unknown	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G11260	Predicted Reconstituted Complex	FSW = 0.0335	Unknown	SGT1B PROTEIN BINDING
AT5G11300	Predicted in vivo	FSW = 0.0117	Unknown	CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G67320	Predicted two hybrid in vivo in vitro	FSW = 0.0101	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G67190	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-MS	FSW = 0.0205	Unknown	F-BOX FAMILY PROTEIN
AT2G01830	Predicted two hybrid	FSW = 0.0091	Unknown	WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G19170	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	SLP3 SERINE-TYPE PEPTIDASE
AT2G47110	Predicted Affinity Capture-MS	FSW = 0.0028	Unknown	UBQ6 PROTEIN BINDING
AT3G08560	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0423	Unknown	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G61110	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04880	Predicted synthetic growth defect	FSW = 0.0058	Unknown	ADENOSINE/AMP DEAMINASE FAMILY PROTEIN
AT4G10320	Predicted Affinity Capture-MS	FSW = 0.0150	Unknown	ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE
AT4G14160	Predicted Affinity Capture-MS	FSW = 0.0294	Unknown	TRANSPORT PROTEIN PUTATIVE
AT4G27000	Predicted two hybrid	FSW = 0.0058	Unknown	ATRBP45C RNA BINDING
AT4G30480	Predicted Affinity Capture-MS	FSW = 0.0115	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G06160	Predicted two hybrid	FSW = 0.0027	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G29800	Predicted Phenotypic Enhancement	FSW = 0.0748	Unknown	PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT5G58690	Predicted Synthetic Lethality	FSW = 0.0061	Unknown	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT5G61330	Predicted Phenotypic Enhancement	FSW = 0.0533	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G43500	Predicted synthetic growth defect	FSW = 0.0104	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G55190	Predicted Affinity Capture-MS	FSW = 0.0059	Unknown	RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G58003	Predicted two hybrid	FSW = 0.0051	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT2G31725	Predicted two hybrid	FSW = 0.0266	Unknown	UNKNOWN PROTEIN
AT5G01720	Predicted interaction prediction Enriched domain pair	FSW = 0.0261	Unknown	F-BOX FAMILY PROTEIN (FBL3)
AT5G27740	Predicted interaction prediction	FSW = 0.0083	Unknown	EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G69670	Predicted interaction prediction Shared biological function Co-expression	FSW = 0.0256	Unknown	CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G25650	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1895	Unknown	ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60010	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3220	Unknown	ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G20160	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1851	Unknown	MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03170	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2747	Unknown	ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03160	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1893	Unknown	ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03190	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1942	Unknown	ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21830	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1809	Unknown	ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21860	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1851	Unknown	ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21850	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2549	Unknown	ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2204	Unknown	ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2679	Unknown	ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.4244	Unknown	ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25700	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2708	Unknown	ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G42190 - ( ASK2 (ARABIDOPSIS SKP1-LIKE 2) protein binding / ubiquitin-protein ligase )

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