Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14880 - ( OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) cysteine synthase )
27 Proteins interacs with AT4G14880| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78300
   | Experimental | FSW = 0.0079
| Class A:vacuoleplasma membraneperoxisomenucleuscytosolClass B:plastidcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G55920
| ExperimentalReconstituted ComplexCo-crystal Structurein vitroaffinity technologyCo-crystallization | FSW = 0.0198
| Class A:plastidnucleusClass B:vacuoleplasma membraneperoxisomecytosolClass D:cytosol (p = 0.67) | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT5G56760
| ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.1997
| Class A:cytosolClass B:vacuoleplastidplasma membraneperoxisomenucleusClass D:cytosol (p = 0.67) | ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE |
| AT3G13110
| Experimentaltwo hybrid | FSW = 0.1067
| Class B:vacuoleplastidplasma membraneperoxisomenucleusmitochondrioncytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | ATSERAT22 (SERINE ACETYLTRANSFERASE 22) SERINE O-ACETYLTRANSFERASE |
| AT1G76030
| PredictedAffinity Capture-MS | FSW = 0.0276
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT5G09590
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0087
| Class C:vacuoleplastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT4G14960
| PredictedAffinity Capture-MS | FSW = 0.0202
| Class C:vacuoleplasma membranenucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT5G37640
| PredictedGene fusion method | FSW = 0.0281
| Class C:vacuolenucleus | UBQ9 PROTEIN BINDING |
| AT2G43750
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4228
| Class C:plastid | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
| AT3G61440
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1899
| Class C:plastid | CYSC1 (CYSTEINE SYNTHASE C1) L-3-CYANOALANINE SYNTHASE/ CYSTEINE SYNTHASE |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.0071
| Class C:plasma membranenucleuscytosol | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G48750
| PredictedAffinity Capture-MS | FSW = 0.0088
| Class C:plasma membranenucleuscytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G12250
| PredictedAffinity Capture-MS | FSW = 0.0197
| Class C:plasma membranenucleus | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G11680
| PredictedAffinity Capture-MS | FSW = 0.0241
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT5G28020
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3294
| Class C:plasma membrane | CYSD2 (CYSTEINE SYNTHASE D2) CATALYTIC/ CYSTEINE SYNTHASE/ PYRIDOXAL PHOSPHATE BINDING |
| AT1G79930
| PredictedAffinity Capture-MS | FSW = 0.0103
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT5G57015
| PredictedAffinity Capture-MS | FSW = 0.0055
| Class C:nucleuscytosol | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G54840
| PredictedAffinity Capture-MS | FSW = 0.0180
| Class C:nucleus | SGP1 GTP BINDING |
| AT1G07370
| PredictedAffinity Capture-MS | FSW = 0.0153
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
| AT2G34720
| PredictedAffinity Capture-MS | FSW = 0.0162
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
| AT3G07100
| PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
| AT4G21710
| PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT3G58560
| PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT5G42190
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G28030
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3025
| Unknown | CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE |
| AT3G04940
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2580
| Unknown | CYSD1 (CYSTEINE SYNTHASE D1) CYSTEINE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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