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AT1G07370 - ( PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA binding / DNA polymerase processivity factor/ protein binding )

126 Proteins interacs with AT1G07370

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G09790	Experimental two hybrid	FSW = 0.0079	Class A: nucleus Class B: plastid Class D: nucleus (p = 0.78)	ATXR5 DNA BINDING / PROTEIN BINDING
AT5G24330	Experimental two hybrid	FSW = 0.0079	Class A: nucleus Class D: nucleus (p = 0.78)	ATXR6 DNA BINDING / PROTEIN BINDING
AT5G44740	Experimental pull down two hybrid	FSW = 0.0456	Unknown	POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT5G55120	Experimental	FSW = 0.0080	Unknown	VTC5 (VITAMIN C DEFECTIVE 5) GDP-D-GLUCOSE PHOSPHORYLASE/ GALACTOSE-1-PHOSPHATE GUANYLYLTRANSFERASE (GDP)/ QUERCETIN 4-O-GLUCOSYLTRANSFERASE
YDR419W	Experimental two hybrid	FSW = 0.0165	Unknown	VTC5 (VITAMIN C DEFECTIVE 5) GDP-D-GLUCOSE PHOSPHORYLASE/ GALACTOSE-1-PHOSPHATE GUANYLYLTRANSFERASE (GDP)/ QUERCETIN 4-O-GLUCOSYLTRANSFERASE
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0153	Class C: nucleus	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT2G30620	Predicted Phenotypic Enhancement	FSW = 0.0285	Class C: nucleus	HISTONE H12
AT5G59690	Predicted Phenotypic Enhancement	FSW = 0.0960	Class C: nucleus	HISTONE H4
AT5G43530	Predicted Phenotypic Enhancement two hybrid two hybrid interologs mapping Phenotypic Enhancement Synthetic Rescue	FSW = 0.2965	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G04390	Predicted Synthetic Lethality	FSW = 0.0054	Class C: nucleus	40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT1G08130	Predicted Affinity Capture-Western Affinity Capture-MS Co-crystal Structure Reconstituted Complex interaction prediction Co-expression	FSW = 0.1705	Class C: nucleus	ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT5G67270	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2616	Class C: nucleus	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT4G02070	Predicted Reconstituted Complex Reconstituted Complex Phenotypic Enhancement co-fractionation Co-fractionation Affinity Capture-Western Reconstituted Complex Phenotypic Enhancement Affinity Capture-Western co-fractionation Co-fractionation interaction prediction Co-expression	FSW = 0.1986	Class C: nucleus	MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT3G12810	Predicted Phenotypic Enhancement	FSW = 0.1964	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G21690	Predicted Synthetic Rescue Reconstituted Complex Reconstituted Complex interaction prediction Co-expression	FSW = 0.1293	Class C: nucleus	EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G35910	Predicted Phenotypic Enhancement	FSW = 0.0960	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G44530	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1623	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G13940	Predicted Synthetic Lethality Co-expression	FSW = 0.0604	Class C: nucleus	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G22750	Predicted two hybrid Phenotypic Enhancement interologs mapping Phenotypic Enhancement two hybrid	FSW = 0.2211	Class C: nucleus	RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G65470	Predicted synthetic growth defect Phenotypic Suppression Phenotypic Enhancement Co-expression	FSW = 0.2228	Class C: nucleus	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G13370	Predicted Phenotypic Enhancement	FSW = 0.1229	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740	Predicted Phenotypic Enhancement	FSW = 0.2104	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210	Predicted Phenotypic Enhancement	FSW = 0.2903	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G29570	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1913	Class C: nucleus	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT2G43810	Predicted Phenotypic Suppression	FSW = 0.1738	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630	Predicted Phenotypic Enhancement Affinity Capture-Western Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1891	Class C: nucleus	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted Phenotypic Suppression	FSW = 0.1348	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G20140	Predicted two hybrid	FSW = 0.0043	Class C: nucleus	ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G22110	Predicted Phenotypic Enhancement	FSW = 0.0678	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G43750	Predicted Affinity Capture-MS	FSW = 0.0244	Unknown	OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE
AT3G59760	Predicted interaction prediction	FSW = 0.0168	Unknown	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE
AT2G28190	Predicted Phenotypic Enhancement	FSW = 0.2294	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630	Predicted Phenotypic Enhancement	FSW = 0.1164	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G45300	Predicted Phenotypic Enhancement	FSW = 0.0850	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT2G17265	Predicted Phenotypic Enhancement	FSW = 0.0154	Unknown	HSK (HOMOSERINE KINASE) HOMOSERINE KINASE
AT1G12520	Predicted Phenotypic Enhancement	FSW = 0.2253	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G80190	Predicted Affinity Capture-Western	FSW = 0.0032	Unknown	PSF1 (PARTNER OF SLD FIVE 1)
AT1G11890	Predicted Phenotypic Enhancement	FSW = 0.0972	Unknown	SEC22 TRANSPORTER
AT1G11680	Predicted Synthetic Lethality	FSW = 0.0127	Unknown	CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G18524	Predicted two hybrid Synthetic Rescue Reconstituted Complex Phenotypic Enhancement co-fractionation Co-fractionation Affinity Capture-Western Reconstituted Complex two hybrid Phenotypic Enhancement Reconstituted Complex Phenotypic Enhancement two hybrid Affinity Capture-Western co-fractionation Co-fractionation Synthetic Rescue Co-expression	FSW = 0.1993	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT2G44950	Predicted Phenotypic Enhancement	FSW = 0.2351	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G35940	Predicted Reconstituted Complex two hybrid	FSW = 0.1867	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G47690	Predicted Synthetic Lethality	FSW = 0.1806	Unknown	ATEB1A MICROTUBULE BINDING
AT5G41150	Predicted Phenotypic Suppression	FSW = 0.2587	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970	Predicted Synthetic Lethality Phenotypic Enhancement Co-expression	FSW = 0.3099	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2801	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130	Predicted Phenotypic Enhancement	FSW = 0.3103	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT2G23380	Predicted two hybrid Co-expression	FSW = 0.0120	Unknown	CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.2240	Unknown	SOH1 FAMILY PROTEIN
AT4G26840	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0112	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G63960	Predicted Phenotypic Enhancement Phenotypic Suppression Co-expression	FSW = 0.1716	Unknown	EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G42120	Predicted interologs mapping interologs mapping	FSW = 0.0852	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G54260	Predicted Phenotypic Enhancement	FSW = 0.3368	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G38470	Predicted Phenotypic Enhancement	FSW = 0.0460	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850	Predicted Phenotypic Enhancement	FSW = 0.2287	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G47240	Predicted two hybrid two hybrid	FSW = 0.0140	Unknown	ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT1G16350	Predicted two hybrid Affinity Capture-MS two hybrid interaction prediction Gene neighbors method Co-expression	FSW = 0.0089	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT3G57870	Predicted two hybrid two hybrid interologs mapping two hybrid	FSW = 0.0647	Unknown	SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT1G04020	Predicted Synthetic Rescue Synthetic Rescue two hybrid Synthetic Lethality Synthetic Rescue interologs mapping	FSW = 0.3363	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730	Predicted Reconstituted Complex Phenotypic Enhancement Co-expression	FSW = 0.3565	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08260	Predicted Phenotypic Suppression	FSW = 0.0778	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G08780	Predicted Phenotypic Enhancement	FSW = 0.1483	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G10930	Predicted Phenotypic Enhancement	FSW = 0.2979	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G18090	Predicted Phenotypic Enhancement interologs mapping	FSW = 0.2240	Unknown	EXONUCLEASE PUTATIVE
AT1G21710	Predicted Phenotypic Suppression	FSW = 0.0885	Unknown	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G23260	Predicted Phenotypic Enhancement interologs mapping	FSW = 0.1326	Unknown	MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G24290	Predicted interologs mapping Synthetic Rescue Synthetic Lethality	FSW = 0.1487	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29990	Predicted Phenotypic Enhancement	FSW = 0.1370	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49980	Predicted two hybrid two hybrid Phenotypic Enhancement	FSW = 0.1036	Unknown	DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G51710	Predicted Phenotypic Enhancement	FSW = 0.1487	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740	Predicted Phenotypic Enhancement	FSW = 0.2072	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G63160	Predicted Reconstituted Complex interologs mapping interaction prediction Co-expression	FSW = 0.2862	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G66740	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.3199	Unknown	SGA2
AT1G79890	Predicted Phenotypic Enhancement	FSW = 0.1384	Unknown	HELICASE-RELATED
AT2G02760	Predicted Synthetic Rescue Synthetic Rescue Phenotypic Enhancement	FSW = 0.2728	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G03270	Predicted Phenotypic Suppression	FSW = 0.0080	Unknown	DNA-BINDING PROTEIN PUTATIVE
AT2G23070	Predicted Phenotypic Enhancement	FSW = 0.0295	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.1045	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580	Predicted Phenotypic Enhancement	FSW = 0.2947	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G02820	Predicted Phenotypic Enhancement	FSW = 0.2213	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G06670	Predicted Phenotypic Enhancement	FSW = 0.0779	Unknown	BINDING
AT3G18860	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2241	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590	Predicted Phenotypic Suppression	FSW = 0.1561	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660	Predicted Phenotypic Enhancement	FSW = 0.3515	Unknown	NUCLEOTIDE BINDING
AT3G46320	Predicted Phenotypic Suppression	FSW = 0.0503	Unknown	HISTONE H4
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.1753	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G56640	Predicted Synthetic Lethality	FSW = 0.0016	Unknown	EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G60860	Predicted Synthetic Lethality	FSW = 0.0036	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G02460	Predicted Phenotypic Enhancement Co-expression	FSW = 0.2046	Unknown	PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING
AT4G15770	Predicted Synthetic Lethality Co-expression	FSW = 0.0016	Unknown	RNA BINDING / PROTEIN BINDING
AT4G16970	Predicted Phenotypic Enhancement	FSW = 0.0905	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G17380	Predicted Phenotypic Enhancement	FSW = 0.0391	Unknown	MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G25120	Predicted two hybrid Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.2382	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G27180	Predicted Phenotypic Enhancement	FSW = 0.1660	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G30870	Predicted Phenotypic Enhancement	FSW = 0.2104	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G33240	Predicted Phenotypic Suppression	FSW = 0.1471	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G38630	Predicted Phenotypic Enhancement	FSW = 0.1391	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10390	Predicted Phenotypic Enhancement	FSW = 0.1282	Unknown	HISTONE H3
AT5G22010	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Lethality Synthetic Lethality Synthetic Lethality Reconstituted Complex two hybrid interaction prediction	FSW = 0.2653	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G26680	Predicted Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Phenotypic Enhancement interaction prediction	FSW = 0.3584	Unknown	ENDONUCLEASE PUTATIVE
AT5G27740	Predicted interaction prediction Synthetic Lethality Reconstituted Complex interologs mapping interologs mapping Reconstituted Complex interologs mapping interologs mapping Co-expression	FSW = 0.2548	Unknown	EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G43500	Predicted Phenotypic Enhancement	FSW = 0.3180	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G48120	Predicted Phenotypic Enhancement	FSW = 0.1695	Unknown	BINDING
AT5G49510	Predicted Phenotypic Suppression	FSW = 0.1466	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G55310	Predicted Phenotypic Suppression	FSW = 0.1567	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G57160	Predicted Phenotypic Enhancement	FSW = 0.0132	Unknown	ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61150	Predicted Phenotypic Suppression	FSW = 0.1037	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63920	Predicted Phenotypic Enhancement	FSW = 0.2338	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT5G65180	Predicted Phenotypic Suppression	FSW = 0.1522	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G66100	Predicted Phenotypic Enhancement	FSW = 0.1533	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G08880	Predicted Phenotypic Suppression	FSW = 0.0551	Unknown	H2AXA DNA BINDING
AT1G77470	Predicted Synthetic Rescue Reconstituted Complex interaction prediction Co-expression	FSW = 0.1408	Unknown	REPLICATION FACTOR C 36 KDA PUTATIVE
AT3G06460	Predicted Reconstituted Complex	FSW = 0.0172	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G25540	Predicted Protein-peptide interaction prediction	FSW = 0.1238	Unknown	MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G10400	Predicted Phenotypic Enhancement	FSW = 0.1157	Unknown	HISTONE H3
AT5G10960	Predicted Reconstituted Complex Phenotypic Enhancement	FSW = 0.1491	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G40440	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0056	Unknown	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE
AT5G60040	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0132	Unknown	NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT2G23080	Predicted Affinity Capture-MS	FSW = 0.0202	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT4G36050	Predicted Co-purification two hybrid	FSW = 0.0091	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G15920	Predicted Phenotypic Enhancement Reconstituted Complex	FSW = 0.1160	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT4G09140	Predicted Phenotypic Enhancement two hybrid interaction prediction Co-expression	FSW = 0.1361	Unknown	MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT1G29630	Predicted Phenotypic Enhancement	FSW = 0.1102	Unknown	NUCLEASE
AT1G01960	Predicted Synthetic Lethality	FSW = 0.0068	Unknown	EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G14400	Predicted Synthetic Rescue	FSW = 0.1583	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G18630	Predicted interaction prediction Co-expression	FSW = 0.0401	Unknown	URACIL DNA GLYCOSYLASE FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G07370 - ( PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA binding / DNA polymerase processivity factor/ protein binding )

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