Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06460 - ( GNS1/SUR4 membrane family protein )
77 Proteins interacs with AT3G06460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedSynthetic Rescue | FSW = 0.0214
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G49240 | PredictedSynthetic Rescue | FSW = 0.0212
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0534
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0841
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G66680 | Predictedtwo hybridinteraction prediction | FSW = 0.0587
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G08710 | PredictedPhenotypic Enhancement | FSW = 0.0226
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G14010 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G05940 | Predictedinteraction prediction | FSW = 0.0803
| Unknown | CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT1G58030 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G01620 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0661
| Unknown | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT4G35090 | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | CAT2 (CATALASE 2) CATALASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0394
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G30580 | PredictedSynthetic Lethality | FSW = 0.0118
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT5G16150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0572
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.1184
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G32360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1748
| Unknown | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT3G12110 | PredictedSynthetic Rescue | FSW = 0.0216
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G08560 | Predictedinterologs mapping | FSW = 0.0591
| Unknown | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT1G52600 | Predictedtwo hybridinteraction prediction | FSW = 0.0887
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G51460 | Predictedtwo hybridinteraction prediction | FSW = 0.1067
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G11680 | Predictedtwo hybridinteraction prediction | FSW = 0.0202
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G55360 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Westerninteraction prediction | FSW = 0.0770
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT3G03800 | PredictedPhenotypic Enhancement | FSW = 0.0612
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0127
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G19930 | PredictedPhenotypic Enhancement | FSW = 0.0938
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G04750 | Predictedinterologs mapping | FSW = 0.0516
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.1312
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G53165 | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G07370 | PredictedReconstituted Complex | FSW = 0.0172
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.0874
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G27980 | Predictedinteraction prediction | FSW = 0.0745
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT1G67730 | PredictedSynthetic Lethality | FSW = 0.1901
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT5G66020 | Predictedtwo hybrid | FSW = 0.0753
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT1G57550 | Predictedtwo hybrid | FSW = 0.1033
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G08840 | PredictedAffinity Capture-Western | FSW = 0.0108
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G57600 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0252
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.1272
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G80500 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G21890 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G06080 | Predictedtwo hybridinteraction prediction | FSW = 0.0354
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.1622
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.2029
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.0926
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0442
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G26690 | Predictedtwo hybridinteraction prediction | FSW = 0.0572
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G31470 | Predictedtwo hybridinteraction prediction | FSW = 0.0459
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0131
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G54370 | Predictedtwo hybridinteraction prediction | FSW = 0.0325
| Unknown | NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G69640 | Predictedtwo hybridinteraction prediction | FSW = 0.1688
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G71530 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0288
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0146
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G13680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0145
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.0957
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G40190 | Predictedtwo hybridinteraction prediction | FSW = 0.0857
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT3G05960 | PredictedPhenotypic Enhancement | FSW = 0.0380
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0467
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G29060 | PredictedPhenotypic Enhancement | FSW = 0.0805
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT3G44190 | PredictedAffinity Capture-Western | FSW = 0.0524
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.0513
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0077
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G39830 | Predictedtwo hybridinteraction prediction | FSW = 0.0562
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G05070 | PredictedSynthetic Lethality | FSW = 0.0607
| Unknown | ZINC ION BINDING |
AT5G24840 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0100
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G65690 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT5G10480 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0459
| Unknown | PAS2 (PASTICCINO 2) ENOYL-COA HYDRATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0084
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G24470 | PredictedSynthetic Lethality | FSW = 0.2332
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G22425 | Predictedtwo hybrid | FSW = 0.1231
| Unknown | PEPTIDASE |
AT1G31820 | Predictedtwo hybridinteraction prediction | FSW = 0.1071
| Unknown | AMINO ACID PERMEASE FAMILY PROTEIN |
AT1G14290 | Predictedtwo hybrid | FSW = 0.1684
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G38905 | Predictedinteraction prediction | FSW = 0.1145
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT4G40042 | Predictedinteraction prediction | FSW = 0.1432
| Unknown | PEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454