Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G67730 - ( YBR159 ketoreductase/ oxidoreductase )
52 Proteins interacs with AT1G67730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybrid | FSW = 0.0593
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G23670 | PredictedPhenotypic Enhancement | FSW = 0.0097
| Class C:endoplasmic reticulum | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G76490 | Predictedtwo hybrid | FSW = 0.0639
| Class C:endoplasmic reticulum | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT1G52600 | Predictedtwo hybrid | FSW = 0.0488
| Class C:endoplasmic reticulum | SIGNAL PEPTIDASE PUTATIVE |
AT3G55360 | Predictedtwo hybrid | FSW = 0.1076
| Class C:endoplasmic reticulum | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G28490 | Predictedtwo hybrid | FSW = 0.0261
| Class C:endoplasmic reticulum | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0132
| Class C:endoplasmic reticulum | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT3G01380 | Predictedtwo hybrid | FSW = 0.0392
| Class C:endoplasmic reticulum | CATALYTIC/ TRANSFERASE |
AT5G66020 | Predictedtwo hybrid | FSW = 0.0518
| Class C:endoplasmic reticulum | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT3G05590 | Predictedtwo hybrid | FSW = 0.0392
| Unknown | RPL18 (RIBOSOMAL PROTEIN L18) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G70330 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | ENT1AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) NUCLEOSIDE TRANSMEMBRANE TRANSPORTER/ NUCLEOSIDE TRANSMEMBRANE TRANSPORTER AGAINST A CONCENTRATION GRADIENT |
AT5G27850 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT5G47560 | Predictedtwo hybrid | FSW = 0.0604
| Unknown | TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) MALATE TRANSMEMBRANE TRANSPORTER/ SODIUMDICARBOXYLATE SYMPORTER |
AT1G07420 | Predictedtwo hybrid | FSW = 0.1096
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G03800 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT3G54700 | Predictedtwo hybrid | FSW = 0.0624
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G32090 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G13560 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT1G55130 | Predictedtwo hybrid | FSW = 0.0268
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT1G04980 | Predictedtwo hybrid | FSW = 0.0104
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
AT2G31200 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT3G02580 | Predictedtwo hybrid | FSW = 0.0401
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G23090 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | AST91 (SULFATE TRANSPORTER 91) SULFATE TRANSMEMBRANE TRANSPORTER |
AT2G32730 | Predictedtwo hybrid | FSW = 0.0054
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G16310 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | UCH1 UBIQUITIN THIOLESTERASE |
AT1G13180 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20575 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G30825 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT1G06080 | Predictedtwo hybrid | FSW = 0.0507
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G08750 | Predictedtwo hybrid | FSW = 0.1266
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0709
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16570 | Predictedtwo hybrid | FSW = 0.3078
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G26690 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G31470 | Predictedtwo hybrid | FSW = 0.0958
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT1G69640 | Predictedtwo hybrid | FSW = 0.1306
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G78720 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G01170 | Predictedtwo hybrid | FSW = 0.0361
| Unknown | BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT2G34980 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G40190 | Predictedtwo hybrid | FSW = 0.1220
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT3G30842 | Predictedtwo hybrid | FSW = 0.0025
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G25750 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G32530 | Predictedtwo hybrid | FSW = 0.0697
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G39830 | Predictedtwo hybrid | FSW = 0.0797
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G17860 | Predictedtwo hybrid | FSW = 0.0221
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G65990 | Predictedtwo hybrid | FSW = 0.0392
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G06460 | PredictedSynthetic Lethality | FSW = 0.1901
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G65650 | Predictedtwo hybrid | FSW = 0.0495
| Unknown | UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G24470 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4734
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G32990 | PredictedGene fusion method | FSW = 0.0208
| Unknown | NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454