Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13560 - ( AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) phosphatidyltransferase/ phosphotransferase for other substituted phosphate groups )
19 Proteins interacs with AT1G13560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | Predictedtwo hybridinteraction prediction | FSW = 0.0209
| Class C:mitochondrion | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G01280 | Predictedtwo hybrid | FSW = 0.0296
| Class C:mitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G07680 | Predictedtwo hybrid | FSW = 0.0319
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G22845 | Predictedtwo hybridinteraction prediction | FSW = 0.0435
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G14930 | PredictedAffinity Capture-MS | FSW = 0.1559
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G11890 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0115
| Unknown | SEC22 TRANSPORTER |
AT4G34580 | PredictedSynthetic Rescue | FSW = 0.0186
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0056
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G44660 | Predictedtwo hybridinteraction prediction | FSW = 0.0220
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT3G28360 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | PGP16 (P-GLYCOPROTEIN 16) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G60550 | PredictedAffinity Capture-MS | FSW = 0.1341
| Unknown | CYCP32 (CYCLIN P32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G26690 | Predictedtwo hybridinteraction prediction | FSW = 0.0798
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G64170 | PredictedAffinity Capture-MS | FSW = 0.1559
| Unknown | ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0494
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G25585 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0602
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454