Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34580 - ( COW1 (CAN OF WORMS1) phosphatidylinositol transporter/ transporter )
36 Proteins interacs with AT4G34580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G38480 | PredictedDosage Growth Defect | FSW = 0.0685
| Class C:plasma membranecytosol | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G51670 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0821
| Class C:plasma membranecytosol | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G01630 | Predictedinterologs mappinginterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0818
| Class C:plasma membranecytosol | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT4G39180 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0274
| Class C:plasma membranecytosol | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G02130 | Predictedsynthetic growth defect | FSW = 0.0721
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G12360 | PredictedPhenotypic Suppression | FSW = 0.1034
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
AT1G16920 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0927
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT3G02520 | PredictedDosage Growth Defect | FSW = 0.0484
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G35020 | Predictedinterologs mapping | FSW = 0.0413
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT1G33140 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45200 | PredictedSynthetic Lethality | FSW = 0.0524
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G30710 | PredictedSynthetic Lethality | FSW = 0.0749
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G13610 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | UNKNOWN PROTEIN |
AT2G17520 | Predictedsynthetic growth defect | FSW = 0.0098
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G16810 | PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT1G13560 | PredictedSynthetic Rescue | FSW = 0.0186
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G05710 | PredictedSynthetic Lethality | FSW = 0.0967
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G66020 | PredictedSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0557
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT1G23820 | PredictedSynthetic Lethality | FSW = 0.0274
| Unknown | SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE |
AT1G26450 | PredictedSynthetic Lethality | FSW = 0.0915
| Unknown | BETA-13-GLUCANASE-RELATED |
AT2G27600 | PredictedSynthetic Lethality | FSW = 0.0332
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G32260 | PredictedSynthetic RescueSynthetic RescuePhenotypic Enhancement | FSW = 0.0410
| Unknown | CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE PUTATIVE / PHOSPHORYLCHOLINE TRANSFERASE PUTATIVE / CTPPHOSPHOCHOLINE CYTIDYLYLTRANSFERASE PUTATIVE |
AT2G37550 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescueinterologs mapping | FSW = 0.1289
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G05000 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1388
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G16785 | PredictedSynthetic Lethalitysynthetic growth defectsynthetic growth defectSynthetic Lethality | FSW = 0.1201
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0819
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G09760 | PredictedSynthetic RescueSynthetic RescueSynthetic RescuePhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0867
| Unknown | CHOLINE KINASE PUTATIVE |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0071
| Unknown | UNKNOWN PROTEIN |
AT4G16580 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | CATALYTIC |
AT1G17140 | PredictedPhenotypic Suppression | FSW = 0.0141
| Unknown | TROPOMYOSIN-RELATED |
AT1G21170 | PredictedPhenotypic Suppression | FSW = 0.1204
| Unknown | SEC5B |
AT5G09350 | Predictedinterologs mappinginterologs mapping | FSW = 0.2145
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.0205
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G52200 | Predictedinterologs mapping | FSW = 0.0064
| Unknown | UNKNOWN PROTEIN |
AT5G52210 | PredictedSynthetic Lethality | FSW = 0.0547
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT1G69380 | Predictedinteraction prediction | FSW = 0.0410
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454