Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G30710 - ( RabGAP/TBC domain-containing protein )
67 Proteins interacs with AT2G30710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | PredictedPhenotypic Enhancement | FSW = 0.0962
| Class C:vacuole | RIBOPHORIN I FAMILY PROTEIN |
AT1G76030 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0311
| Class C:vacuole | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT3G42050 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0778
| Class C:vacuole | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT1G20260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0119
| Class C:vacuole | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G66680 | PredictedSynthetic Lethality | FSW = 0.1680
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT4G19640 | Predictedbiochemical | FSW = 0.1360
| Class C:vacuole | ARA7 GTP BINDING |
AT1G02130 | PredictedSynthetic RescuePhenotypic Suppressioninterologs mappinginterologs mappingbiochemical | FSW = 0.0690
| Class C:vacuole | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT2G44610 | Predictedinteraction prediction | FSW = 0.1277
| Class C:vacuole | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G31780 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.2905
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.3562
| Class C:vacuole | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G45130 | Predictedbiochemical | FSW = 0.1295
| Class C:vacuole | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0111
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G22740 | Predictedbiochemicalinterologs mapping | FSW = 0.1047
| Class C:vacuole | RABG3B GTP BINDING |
AT1G55190 | PredictedPhenotypic Enhancement | FSW = 0.1169
| Class C:vacuole | PRA7 |
AT5G63840 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1902
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G07420 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0888
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G06470 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0978
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT3G16100 | Predictedbiochemicalinterologs mapping | FSW = 0.1115
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.1175
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2848
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G51460 | Predictedinterologs mapping | FSW = 0.0602
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G11680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0304
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT1G11890 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.0907
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1954
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G34580 | PredictedSynthetic Lethality | FSW = 0.0749
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0339
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G15680 | PredictedSynthetic Lethality | FSW = 0.0069
| Unknown | BINDING |
AT1G13210 | Predictedinterologs mapping | FSW = 0.1056
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT3G09900 | Predictedbiochemical | FSW = 0.0411
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT3G52940 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | FK (FACKEL) DELTA14-STEROL REDUCTASE |
AT2G22290 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1548
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G04260 | Predictedinterologs mapping | FSW = 0.1357
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.3014
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT2G13650 | PredictedPhenotypic Enhancement | FSW = 0.0357
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G07290 | Predictedinterologs mapping | FSW = 0.1633
| Unknown | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1523
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.1218
| Unknown | ARV1 |
AT1G76400 | Predictedinterologs mapping | FSW = 0.0443
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.1099
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0060
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G63860 | PredictedGene fusion method | FSW = 0.0047
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT4G39220 | PredictedPhenotypic Enhancement | FSW = 0.2332
| Unknown | ATRER1A |
AT1G10030 | PredictedSynthetic Lethality | FSW = 0.0856
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT5G38460 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3608
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT1G04200 | Predictedtwo hybridtwo hybrid | FSW = 0.0163
| Unknown | UNKNOWN PROTEIN |
AT1G07430 | PredictedSynthetic Lethality | FSW = 0.0391
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G16560 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2841
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3630
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.2635
| Unknown | CATALYTIC/ TRANSFERASE |
AT1G08780 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0140
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.3060
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2267
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G37550 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2667
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G50860 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1839
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1015
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G52210 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancement | FSW = 0.2222
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G66640 | Predictedbiochemical | FSW = 0.0024
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT2G34770 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1992
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G04080 | Predictedinterologs mapping | FSW = 0.3091
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT1G09460 | Predictedinterologs mapping | FSW = 0.2541
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT2G18240 | Predictedinterologs mapping | FSW = 0.2196
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.2344
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G14230 | Predictedinterologs mapping | FSW = 0.1684
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
AT1G43900 | PredictedSynthetic Lethality | FSW = 0.0527
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G51160 | PredictedSynthetic Rescue | FSW = 0.0761
| Unknown | SYNBINDIN PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454