Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09460 - ( glucan endo-13-beta-glucosidase-related )
56 Proteins interacs with AT1G09460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedinterologs mapping | FSW = 0.2351
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT4G19640 | Predictedinterologs mapping | FSW = 0.0879
| Unknown | ARA7 GTP BINDING |
AT1G31780 | Predictedinterologs mapping | FSW = 0.1611
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mapping | FSW = 0.2284
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G30710 | Predictedinterologs mapping | FSW = 0.2541
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G27380 | Predictedinterologs mapping | FSW = 0.0166
| Unknown | GSH2 (GLUTATHIONE SYNTHETASE 2) GLUTATHIONE SYNTHASE |
AT5G63840 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1546
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G01320 | Predictedinterologs mapping | FSW = 0.0171
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G09210 | Predictedinterologs mapping | FSW = 0.2373
| Unknown | CALRETICULIN 2 (CRT2) |
AT5G17770 | Predictedinterologs mapping | FSW = 0.0276
| Unknown | ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE |
AT5G23630 | Predictedinterologs mapping | FSW = 0.1610
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G20090 | Predictedinterologs mapping | FSW = 0.0090
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT2G19830 | Predictedinterologs mapping | FSW = 0.0261
| Unknown | SNF72 |
AT1G03920 | Predictedsynthetic growth defect | FSW = 0.0273
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G33090 | Predictedtwo hybrid | FSW = 0.0023
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G08970 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0226
| Unknown | NF-YC9 (NUCLEAR FACTOR Y SUBUNIT C9) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G69120 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0219
| Unknown | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G58000 | Predictedinterologs mapping | FSW = 0.0701
| Unknown | LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK) |
AT1G26310 | Predictedinterologs mapping | FSW = 0.0353
| Unknown | CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G22290 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1166
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G71270 | Predictedinterologs mapping | FSW = 0.1323
| Unknown | POK (POKY POLLEN TUBE) |
AT1G10130 | Predictedinterologs mapping | FSW = 0.2808
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G39630 | Predictedinterologs mapping | FSW = 0.1453
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G05710 | Predictedinterologs mapping | FSW = 0.2120
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G38460 | Predictedinterologs mapping | FSW = 0.2414
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G44660 | Predictedinterologs mapping | FSW = 0.1941
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0075
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0039
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G09580 | PredictedAffinity Capture-Western | FSW = 0.0856
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G27600 | Predictedinterologs mapping | FSW = 0.0336
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G52210 | Predictedinterologs mapping | FSW = 0.1004
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G27970 | Predictedinterologs mapping | FSW = 0.1350
| Unknown | BINDING |
AT5G02410 | Predictedinterologs mapping | FSW = 0.1213
| Unknown | DIE2/ALG10 FAMILY |
AT3G50860 | Predictedinterologs mapping | FSW = 0.1670
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G46460 | Predictedinterologs mapping | FSW = 0.0403
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G05000 | Predictedinterologs mapping | FSW = 0.0586
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G04080 | Predictedinterologs mapping | FSW = 0.3262
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT2G34770 | Predictedinterologs mapping | FSW = 0.1517
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G28850 | Predictedinterologs mapping | FSW = 0.1888
| Unknown | CYP710A3 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 3) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G18240 | Predictedinterologs mapping | FSW = 0.3125
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G57600 | Predictedinterologs mapping | FSW = 0.3504
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G48760 | Predictedinterologs mapping | FSW = 0.2378
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G24320 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.2319
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT1G20575 | Predictedinterologs mapping | FSW = 0.1618
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G16900 | Predictedinterologs mapping | FSW = 0.0849
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G16560 | Predictedinterologs mapping | FSW = 0.2787
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1971
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT2G03410 | Predictedsynthetic growth defect | FSW = 0.0120
| Unknown | MO25 FAMILY PROTEIN |
AT1G09000 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0988
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT1G43900 | PredictedSynthetic Lethality | FSW = 0.0847
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G10810 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0113
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G18430 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0310
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G72680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0130
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0095
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G50030 | PredictedSynthetic Rescue | FSW = 0.0115
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454