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AT5G26680 - ( endonuclease putative )

164 Proteins interacs with AT5G26680

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G28715	Predicted interaction prediction	FSW = 0.0073	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G28710	Predicted two hybrid	FSW = 0.0133	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT2G30970	Predicted Synthetic Lethality	FSW = 0.0203	Unknown	ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G22110	Predicted Phenotypic Suppression	FSW = 0.0500	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G44110	Predicted Synthetic Lethality	FSW = 0.0271	Unknown	ATJ3 PROTEIN BINDING
AT5G43530	Predicted synthetic growth defect	FSW = 0.2814	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G28190	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1845	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.1852	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2766	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G22060	Predicted Synthetic Lethality interaction prediction	FSW = 0.0352	Unknown	ATJ2 PROTEIN BINDING
AT3G48750	Predicted Reconstituted Complex	FSW = 0.0608	Unknown	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G11964	Predicted Affinity Capture-MS Co-expression	FSW = 0.0019	Unknown	RNA BINDING
AT3G51460	Predicted synthetic growth defect	FSW = 0.0466	Unknown	RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT1G07670	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0450	Unknown	CALCIUM-TRANSPORTING ATPASE
AT3G18524	Predicted Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2178	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G57720	Predicted Synthetic Lethality	FSW = 0.0100	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G09640	Predicted Synthetic Lethality	FSW = 0.0052	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G08130	Predicted Reconstituted Complex Co-expression	FSW = 0.1095	Unknown	ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT4G07950	Predicted Phenotypic Enhancement	FSW = 0.0034	Unknown	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT2G44680	Predicted synthetic growth defect	FSW = 0.0970	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720	Predicted Synthetic Lethality	FSW = 0.1095	Unknown	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67270	Predicted synthetic growth defect	FSW = 0.2294	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490	Predicted Phenotypic Enhancement	FSW = 0.1266	Unknown	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G12810	Predicted synthetic growth defect	FSW = 0.1812	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530	Predicted synthetic growth defect	FSW = 0.1566	Unknown	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G43810	Predicted synthetic growth defect Co-expression	FSW = 0.1813	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G02680	Predicted Phenotypic Enhancement	FSW = 0.0609	Unknown	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT5G64630	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement interaction prediction	FSW = 0.1417	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted synthetic growth defect	FSW = 0.1826	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted Synthetic Lethality	FSW = 0.1528	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G03190	Predicted synthetic growth defect	FSW = 0.0930	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G02740	Predicted synthetic growth defect	FSW = 0.1317	Unknown	CHROMATIN BINDING
AT5G22750	Predicted synthetic growth defect	FSW = 0.2226	Unknown	RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G26150	Predicted synthetic growth defect	FSW = 0.1257	Unknown	ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G29570	Predicted two hybrid two hybrid two hybrid two hybrid two hybrid in vivo in vivo in vivo in vivo in vivo in vitro in vitro in vitro in vitro in vitro Affinity Capture-MS Reconstituted Complex Reconstituted Complex synthetic growth defect Co-expression	FSW = 0.1534	Unknown	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G07370	Predicted Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Phenotypic Enhancement interaction prediction	FSW = 0.3584	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2418	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G27470	Predicted synthetic growth defect	FSW = 0.0833	Unknown	NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT3G19210	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.4023	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G09540	Predicted synthetic growth defect	FSW = 0.0268	Unknown	MYB61 (MYB DOMAIN PROTEIN 61) DNA BINDING / TRANSCRIPTION FACTOR
AT2G06210	Predicted Phenotypic Suppression	FSW = 0.0534	Unknown	ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950	Predicted Synthetic Lethality	FSW = 0.2374	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G10130	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.0319	Unknown	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT5G66020	Predicted synthetic growth defect	FSW = 0.0568	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G47690	Predicted synthetic growth defect	FSW = 0.1792	Unknown	ATEB1A MICROTUBULE BINDING
AT5G41150	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.2093	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G05170	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0811	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT3G02580	Predicted Phenotypic Enhancement	FSW = 0.0090	Unknown	STE1 (STEROL 1) C-5 STEROL DESATURASE
AT2G31970	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3993	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G41460	Predicted in vivo in vitro Affinity Capture-MS Co-expression	FSW = 0.0097	Unknown	ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE
AT5G57450	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3781	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2530	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT1G16190	Predicted synthetic growth defect	FSW = 0.0233	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G40820	Predicted Synthetic Lethality	FSW = 0.1559	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G63960	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Co-expression	FSW = 0.1547	Unknown	EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G42120	Predicted Synthetic Lethality	FSW = 0.0747	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G05210	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0611	Unknown	ERCC1 5-FLAP ENDONUCLEASE
AT3G28030	Predicted interologs mapping Phenotypic Enhancement synthetic growth defect Enriched domain pair Co-expression	FSW = 0.1296	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.4901	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G52650	Predicted two hybrid	FSW = 0.0071	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT5G41520	Predicted two hybrid	FSW = 0.0064	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10B)
AT5G38470	Predicted synthetic growth defect	FSW = 0.0313	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT3G54860	Predicted synthetic growth defect	FSW = 0.1445	Unknown	VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT5G20850	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3447	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G08830	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1517	Unknown	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT4G34900	Predicted two hybrid	FSW = 0.0306	Unknown	XDH2 (XXANTHINE DEHYDROGENASE 2) FAD BINDING / CATALYTIC/ ELECTRON CARRIER/ IRON ION BINDING / IRON-SULFUR CLUSTER BINDING / METAL ION BINDING / OXIDOREDUCTASE/ XANTHINE DEHYDROGENASE
AT3G23590	Predicted in vivo in vitro in vitro in vivo Reconstituted Complex	FSW = 0.0346	Unknown	RFR1 (REF4-RELATED 1)
AT1G10930	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Affinity Capture-Western Reconstituted Complex Phenotypic Suppression Phenotypic Enhancement	FSW = 0.3115	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G05740	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0834	Unknown	RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G54180	Predicted Affinity Capture-MS biochemical Reconstituted Complex	FSW = 0.0222	Unknown	CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT5G11300	Predicted biochemical Reconstituted Complex Affinity Capture-Western	FSW = 0.0237	Unknown	CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G27680	Predicted in vivo in vivo in vitro in vitro Reconstituted Complex	FSW = 0.0324	Unknown	RECQSIM (ARABIDOPSIS RECQ HELICASE SIM) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G40490	Predicted two hybrid Affinity Capture-MS Affinity Capture-Western Reconstituted Complex in vitro in vivo Synthetic Lethality Co-expression	FSW = 0.1299	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G03150	Predicted Synthetic Lethality	FSW = 0.0172	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT1G04020	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.3534	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730	Predicted interaction prediction Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.4242	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.0357	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G05910	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1251	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G07430	Predicted synthetic growth defect	FSW = 0.0571	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G08190	Predicted synthetic growth defect	FSW = 0.0190	Unknown	VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT1G08260	Predicted Phenotypic Enhancement Phenotypic Enhancement Co-expression	FSW = 0.0427	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G08840	Predicted interologs mapping interologs mapping interologs mapping interologs mapping Synthetic Lethality interologs mapping Synthetic Lethality synthetic growth defect Synthetic Lethality two hybrid interaction prediction	FSW = 0.1966	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G12470	Predicted synthetic growth defect	FSW = 0.1466	Unknown	PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G18090	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality interologs mapping synthetic growth defect Phenotypic Enhancement	FSW = 0.1544	Unknown	EXONUCLEASE PUTATIVE
AT1G26450	Predicted Synthetic Lethality	FSW = 0.0152	Unknown	BETA-13-GLUCANASE-RELATED
AT1G51710	Predicted synthetic growth defect	FSW = 0.1623	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740	Predicted synthetic growth defect	FSW = 0.2030	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54370	Predicted synthetic growth defect	FSW = 0.0528	Unknown	NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G60490	Predicted synthetic growth defect	FSW = 0.1347	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G61040	Predicted Synthetic Lethality	FSW = 0.0977	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G66740	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3611	Unknown	SGA2
AT1G67190	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.3555	Unknown	F-BOX FAMILY PROTEIN
AT1G69680	Predicted synthetic growth defect	FSW = 0.0383	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G79890	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement interaction prediction	FSW = 0.0703	Unknown	HELICASE-RELATED
AT1G80410	Predicted synthetic growth defect	FSW = 0.2204	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2670	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G18290	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0598	Unknown	ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G19750	Predicted Synthetic Lethality	FSW = 0.0046	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30A)
AT2G25100	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0564	Unknown	RIBONUCLEASE HII FAMILY PROTEIN
AT2G44580	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.4139	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G02820	Predicted interaction prediction Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.2950	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G06910	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality interologs mapping	FSW = 0.0653	Unknown	ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G10070	Predicted Phenotypic Enhancement	FSW = 0.0668	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G12400	Predicted synthetic growth defect	FSW = 0.1694	Unknown	ELC UBIQUITIN BINDING
AT3G18860	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1826	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20630	Predicted synthetic growth defect	FSW = 0.0564	Unknown	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT3G22590	Predicted synthetic growth defect	FSW = 0.1387	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect	FSW = 0.4771	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2192	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G11920	Predicted synthetic growth defect	FSW = 0.1425	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT4G15475	Predicted Synthetic Lethality	FSW = 0.0100	Unknown	F-BOX FAMILY PROTEIN (FBL4)
AT4G25120	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.3102	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G27040	Predicted synthetic growth defect	FSW = 0.0863	Unknown	VPS22
AT4G30870	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.2432	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G33240	Predicted Phenotypic Enhancement	FSW = 0.0984	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G38630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1391	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09230	Predicted Synthetic Lethality interaction prediction	FSW = 0.0361	Unknown	SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G10270	Predicted synthetic growth defect	FSW = 0.1742	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10960	Predicted synthetic growth defect	FSW = 0.2315	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.2512	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G25490	Predicted synthetic growth defect	FSW = 0.0195	Unknown	ZINC FINGER (RAN-BINDING) FAMILY PROTEIN
AT1G10520	Predicted Phenotypic Enhancement	FSW = 0.0180	Unknown	DNA POLYMERASE LAMBDA (POLL)
AT1G54140	Predicted Phenotypic Enhancement	FSW = 0.0983	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G60620	Predicted Phenotypic Enhancement	FSW = 0.0413	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G63160	Predicted Phenotypic Enhancement	FSW = 0.1563	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT2G45700	Predicted Phenotypic Enhancement	FSW = 0.0570	Unknown	STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT3G46320	Predicted Phenotypic Enhancement	FSW = 0.0452	Unknown	HISTONE H4
AT4G31770	Predicted Phenotypic Enhancement	FSW = 0.0043	Unknown	CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT5G09740	Predicted synthetic growth defect	FSW = 0.2189	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10390	Predicted Phenotypic Enhancement	FSW = 0.0862	Unknown	HISTONE H3
AT5G22010	Predicted Synthetic Lethality	FSW = 0.1176	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G53770	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement interologs mapping	FSW = 0.1389	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G59440	Predicted Synthetic Lethality interaction prediction	FSW = 0.0172	Unknown	ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G27740	Predicted Phenotypic Enhancement	FSW = 0.1646	Unknown	EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G39900	Predicted synthetic growth defect	FSW = 0.0223	Unknown	GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR
AT5G42000	Predicted synthetic growth defect	FSW = 0.0528	Unknown	ORMDL FAMILY PROTEIN
AT5G43500	Predicted Synthetic Lethality	FSW = 0.2079	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600	Predicted synthetic growth defect	FSW = 0.2347	Unknown	GAS41 PROTEIN BINDING
AT5G46190	Predicted synthetic growth defect	FSW = 0.0123	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT5G48640	Predicted synthetic growth defect	FSW = 0.1390	Unknown	CYCLIN FAMILY PROTEIN
AT5G55310	Predicted Synthetic Rescue	FSW = 0.1163	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G63920	Predicted Synthetic Lethality	FSW = 0.2307	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT1G51130	Predicted Synthetic Lethality	FSW = 0.0561	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S NSE4 (INTERPROIPR014854) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G207601) HAS 200 BLAST HITS TO 198 PROTEINS IN 89 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 63 FUNGI - 88 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK)
AT3G50880	Predicted Phenotypic Enhancement	FSW = 0.0126	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT4G02460	Predicted Phenotypic Enhancement	FSW = 0.0917	Unknown	PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING
AT5G02820	Predicted Phenotypic Suppression	FSW = 0.0517	Unknown	RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT1G29630	Predicted Synthetic Lethality Synthetic Lethality interologs mapping synthetic growth defect Synthetic Lethality interaction prediction Enriched domain pair Co-expression	FSW = 0.0613	Unknown	NUCLEASE
AT1G79000	Predicted in vitro in vivo	FSW = 0.0143	Unknown	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT3G26680	Predicted Phenotypic Enhancement	FSW = 0.0600	Unknown	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT5G04430	Predicted synthetic growth defect	FSW = 0.0131	Unknown	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING
AT2G23420	Predicted synthetic growth defect	FSW = 0.1505	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT2G26695	Predicted synthetic growth defect	FSW = 0.0140	Unknown	BINDING / ZINC ION BINDING
AT1G15920	Predicted synthetic growth defect	FSW = 0.2223	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G43900	Predicted synthetic growth defect	FSW = 0.0737	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT3G07120	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1966	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G48630	Predicted synthetic growth defect	FSW = 0.0491	Unknown	CYCLIN FAMILY PROTEIN
AT2G18000	Predicted synthetic growth defect	FSW = 0.1868	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G55255	Predicted Synthetic Lethality	FSW = 0.1654	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G14400	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2387	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G01720	Predicted Synthetic Lethality	FSW = 0.0060	Unknown	F-BOX FAMILY PROTEIN (FBL3)
AT1G09460	Predicted Synthetic Lethality	FSW = 0.0095	Unknown	GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT4G34890	Predicted two hybrid	FSW = 0.0306	Unknown	XDH1 (XANTHINE DEHYDROGENASE 1) XANTHINE DEHYDROGENASE
AT5G39770	Predicted interaction prediction	FSW = 0.0190	Unknown	DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G26680 - ( endonuclease putative )

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