Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02580 - ( STE1 (STEROL 1) C-5 sterol desaturase )

37 Proteins interacs with AT3G02580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G30470Predicted

Phenotypic Enhancement

FSW = 0.0418

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0821

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT1G07420

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0670

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT4G19490

Predicted

Synthetic Lethality

FSW = 0.0762

Unknown

PROTEIN BINDING
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.0519

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G79940

Predicted

interologs mapping

FSW = 0.0564

Unknown

ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G21180

Predicted

Phenotypic Enhancement

FSW = 0.0448

Unknown

ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G11680

Predicted

Synthetic Rescue

FSW = 0.0385

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G09900

Predicted

Synthetic Lethality

FSW = 0.0195

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT4G26110

Predicted

Phenotypic Enhancement

FSW = 0.0122

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT1G20970Predicted

Synthetic Lethality

FSW = 0.0612

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT3G17590

Predicted

Phenotypic Suppression

FSW = 0.0261

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0547

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G71270

Predicted

Synthetic Lethality

FSW = 0.0650

Unknown

POK (POKY POLLEN TUBE)
AT1G67730

Predicted

two hybrid

FSW = 0.0401

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT1G15960

Predicted

two hybrid

FSW = 0.0283

Unknown

NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT1G47240

Predicted

two hybrid

FSW = 0.0585

Unknown

NRAMP2 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT1G10030

Predicted

Affinity Capture-Western

FSW = 0.1453

Unknown

ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28)
AT2G22310

Predicted

Phenotypic Enhancement

FSW = 0.0727

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT1G06080

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0684

Unknown

ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE
AT1G49490

Predicted

Synthetic Lethality

FSW = 0.0338

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.0298

Unknown

NUCLEOTIDE BINDING
AT3G02820

Predicted

Phenotypic Enhancement

FSW = 0.0245

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G12740

Predicted

Synthetic Lethality

FSW = 0.0762

Unknown

ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0445

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT5G10260

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0605

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0290

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G47810

Predicted

Synthetic Lethality

FSW = 0.1452

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G04210

Predicted

Phenotypic Enhancement

FSW = 0.0420

Unknown

PUX4 PROTEIN BINDING
AT4G27690

Predicted

Synthetic Lethality

FSW = 0.1292

Unknown

VPS26B (VACUOLAR PROTEIN SORTING 26B)
AT5G02880

Predicted

Phenotypic Enhancement

FSW = 0.0129

Unknown

UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G26680

Predicted

Phenotypic Enhancement

FSW = 0.0090

Unknown

ENDONUCLEASE PUTATIVE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0455

Unknown

BINDING
AT1G12040

Predicted

Synthetic Lethality

FSW = 0.0382

Unknown

LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL
AT1G16360

Predicted

Synthetic Lethality

FSW = 0.0525

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G24470

Predicted

two hybrid

FSW = 0.0423

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G55810

Predicted

two hybrid

FSW = 0.0057

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454