Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02580 - ( STE1 (STEROL 1) C-5 sterol desaturase )
37 Proteins interacs with AT3G02580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G30470 | PredictedPhenotypic Enhancement | FSW = 0.0418
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0821
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G07420 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0670
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G19490 | PredictedSynthetic Lethality | FSW = 0.0762
| Unknown | PROTEIN BINDING |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0519
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G79940 | Predictedinterologs mapping | FSW = 0.0564
| Unknown | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT4G21180 | PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G11680 | PredictedSynthetic Rescue | FSW = 0.0385
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G09900 | PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0122
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT1G20970 | PredictedSynthetic Lethality | FSW = 0.0612
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT3G17590 | PredictedPhenotypic Suppression | FSW = 0.0261
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0547
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G71270 | PredictedSynthetic Lethality | FSW = 0.0650
| Unknown | POK (POKY POLLEN TUBE) |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0401
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G15960 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G47240 | Predictedtwo hybrid | FSW = 0.0585
| Unknown | NRAMP2 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G10030 | PredictedAffinity Capture-Western | FSW = 0.1453
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT2G22310 | PredictedPhenotypic Enhancement | FSW = 0.0727
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT1G06080 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0684
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G49490 | PredictedSynthetic Lethality | FSW = 0.0338
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | NUCLEOTIDE BINDING |
AT3G02820 | PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G12740 | PredictedSynthetic Lethality | FSW = 0.0762
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
AT3G22480 | Predictedinterologs mappingPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0445
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0605
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G47810 | PredictedSynthetic Lethality | FSW = 0.1452
| Unknown | MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0420
| Unknown | PUX4 PROTEIN BINDING |
AT4G27690 | PredictedSynthetic Lethality | FSW = 0.1292
| Unknown | VPS26B (VACUOLAR PROTEIN SORTING 26B) |
AT5G02880 | PredictedPhenotypic Enhancement | FSW = 0.0129
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G26680 | PredictedPhenotypic Enhancement | FSW = 0.0090
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | BINDING |
AT1G12040 | PredictedSynthetic Lethality | FSW = 0.0382
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT1G16360 | PredictedSynthetic Lethality | FSW = 0.0525
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0423
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454