Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19490 - ( protein binding )
15 Proteins interacs with AT4G19490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08530 | Predictedsynthetic growth defect | FSW = 0.0567
| Class C:plastid | CLATHRIN HEAVY CHAIN PUTATIVE |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0617
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0040
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G04750 | PredictedAffinity Capture-Western | FSW = 0.0326
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G22290 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0853
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G50500 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.4638
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G28490 | PredictedAffinity Capture-WesternReconstituted Complexinteraction prediction | FSW = 0.2270
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G71270 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1878
| Unknown | POK (POKY POLLEN TUBE) |
AT3G05710 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.1003
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G02580 | PredictedSynthetic Lethality | FSW = 0.0762
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G42970 | Predictedtwo hybridtwo hybrid | FSW = 0.0228
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | BIP3 ATP BINDING |
AT2G30410 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0356
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT3G56640 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT1G32270 | Predictedtwo hybrid | FSW = 0.1642
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454