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AT3G08530 - ( clathrin heavy chain putative )

78 Proteins interacs with AT3G08530

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G43160	Experimental Reconstituted Complex in vitro	FSW = 0.0498	Class A: plasma membrane Class B: vacuole plastid	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G40060	Predicted two hybrid in vitro in vitro two hybrid	FSW = 0.0494	Class C: plastid plasma membrane	PROTEIN BINDING / STRUCTURAL MOLECULE
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.0989	Class C: plastid plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G02520	Predicted interologs mapping	FSW = 0.0132	Class C: plastid plasma membrane	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G11710	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.1416	Class C: plastid	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G74710	Predicted synthetic growth defect	FSW = 0.0204	Class C: plastid	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT4G19490	Predicted synthetic growth defect	FSW = 0.0567	Class C: plastid	PROTEIN BINDING
AT2G33120	Predicted Synthetic Lethality	FSW = 0.0212	Class C: plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G19640	Predicted synthetic growth defect	FSW = 0.0089	Class C: plasma membrane	ARA7 GTP BINDING
AT3G11130	Predicted Gene neighbors method Phylogenetic profile method	FSW = 0.1605	Class C: plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.0921	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G38480	Predicted interologs mapping interaction prediction	FSW = 0.0265	Class C: plasma membrane	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160	Predicted interologs mapping	FSW = 0.0229	Class C: plasma membrane	GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G59820	Predicted Synthetic Lethality	FSW = 0.0124	Class C: plasma membrane	ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G13210	Predicted Synthetic Lethality	FSW = 0.0088	Class C: plasma membrane	ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G04750	Predicted Synthetic Lethality	FSW = 0.0261	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.0939	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G71820	Predicted Phenotypic Enhancement	FSW = 0.0506	Class C: plasma membrane	SEC6
AT5G12350	Predicted Affinity Capture-MS	FSW = 0.0282	Class C: plasma membrane	RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.0884	Class C: plasma membrane	ZINC ION BINDING
AT4G23460	Predicted in vitro synthetic growth defect synthetic growth defect synthetic growth defect Affinity Capture-Western Affinity Capture-Western	FSW = 0.1284	Class C: plasma membrane	BETA-ADAPTIN PUTATIVE
AT4G11380	Predicted synthetic growth defect synthetic growth defect synthetic growth defect Affinity Capture-Western Affinity Capture-Western interaction prediction	FSW = 0.1225	Class C: plasma membrane	BETA-ADAPTIN PUTATIVE
AT1G79930	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0143	Class C: plasma membrane	HSP91 ATP BINDING
AT4G32760	Predicted Affinity Capture-MS Affinity Capture-Western Reconstituted Complex	FSW = 0.1605	Class C: plasma membrane	PROTEIN TRANSPORTER
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.0855	Unknown	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT5G45130	Predicted synthetic growth defect	FSW = 0.0084	Unknown	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT5G46860	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0613	Unknown	VAM3 SNAP RECEPTOR
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.0695	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.0939	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT3G12480	Predicted two hybrid two hybrid	FSW = 0.0394	Unknown	NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT5G14170	Predicted two hybrid two hybrid	FSW = 0.0117	Unknown	CHC1
AT2G24490	Predicted two hybrid	FSW = 0.0079	Unknown	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.0454	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G71270	Predicted two hybrid	FSW = 0.0070	Unknown	POK (POKY POLLEN TUBE)
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.0898	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.1135	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT3G07790	Predicted two hybrid two hybrid	FSW = 0.0498	Unknown	DGCR14-RELATED
AT1G60070	Predicted in vitro	FSW = 0.1665	Unknown	BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT3G55480	Predicted in vitro	FSW = 0.0176	Unknown	ADAPTIN FAMILY PROTEIN
AT1G07430	Predicted synthetic growth defect	FSW = 0.0062	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G23900	Predicted synthetic growth defect Affinity Capture-Western	FSW = 0.1665	Unknown	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G47830	Predicted synthetic growth defect	FSW = 0.0362	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G60780	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0917	Unknown	HAP13 (HAPLESS 13) PROTEIN BINDING
AT2G01600	Predicted Affinity Capture-Western Colocalization	FSW = 0.0084	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G17380	Predicted synthetic growth defect synthetic growth defect Affinity Capture-Western interaction prediction	FSW = 0.1227	Unknown	AP19 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G17790	Predicted Phenotypic Enhancement	FSW = 0.0258	Unknown	VPS35A (VPS35 HOMOLOG A)
AT1G25155	Predicted synthetic growth defect	FSW = 0.0191	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26320	Predicted Synthetic Lethality	FSW = 0.0075	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G33110	Predicted Affinity Capture-MS	FSW = 0.1349	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.0615	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G49490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0169	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G53880	Predicted Affinity Capture-MS	FSW = 0.0044	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT3G12740	Predicted Synthetic Lethality	FSW = 0.0386	Unknown	ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER
AT3G18660	Predicted Affinity Capture-MS	FSW = 0.0208	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G23270	Predicted Affinity Capture-Western	FSW = 0.0844	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G53880	Predicted Co-purification	FSW = 0.0163	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.1111	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.0189	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0762	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT4G05320	Predicted interologs mapping	FSW = 0.0253	Unknown	UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT5G57200	Predicted Affinity Capture-Western Colocalization interaction prediction	FSW = 0.0268	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G11660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0265	Unknown	HEAT SHOCK PROTEIN PUTATIVE
AT1G12040	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0476	Unknown	LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL
AT1G03050	Predicted Affinity Capture-Western Colocalization	FSW = 0.0439	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G08670	Predicted Affinity Capture-Western Affinity Capture-Western Colocalization	FSW = 0.0850	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G21380	Predicted Affinity Capture-Western in vitro in vivo Reconstituted Complex synthetic growth defect two hybrid	FSW = 0.1303	Unknown	VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN
AT5G01760	Predicted Affinity Capture-Western	FSW = 0.0871	Unknown	VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN
AT5G10660	Predicted Colocalization	FSW = 0.0518	Unknown	CALMODULIN-BINDING PROTEIN-RELATED
AT2G32850	Predicted in vitro	FSW = 0.0453	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G51890	Predicted two hybrid in vitro in vitro two hybrid	FSW = 0.0120	Unknown	PROTEIN BINDING / STRUCTURAL MOLECULE
AT1G67890	Predicted in vitro	FSW = 0.0247	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G32270	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0411	Unknown	ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT1G75850	Predicted Phenotypic Enhancement	FSW = 0.0314	Unknown	VPS35B (VPS35 HOMOLOG B)
AT1G10730	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1070	Unknown	CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G43900	Predicted synthetic growth defect	FSW = 0.0086	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT4G15930	Predicted two hybrid	FSW = 0.0155	Unknown	MICROTUBULE MOTOR
AT1G72340	Predicted interaction prediction	FSW = 0.0192	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT3G19020	Predicted interaction prediction	FSW = 0.0258	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G08530 - ( clathrin heavy chain putative )

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