Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32850 - ( protein kinase family protein )
56 Proteins interacs with AT2G32850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | Predictedtwo hybrid | FSW = 0.0215
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0173
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G12580 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0343
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G21580 | Predictedbiochemical | FSW = 0.0151
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25B) |
AT5G55400 | PredictedPhenotypic Enhancement | FSW = 0.0300
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0080
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G72370 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G08530 | Predictedin vitro | FSW = 0.0453
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G19750 | Predictedbiochemical | FSW = 0.0157
| Unknown | PEROXISOMAL MEMBRANE 22 KDA FAMILY PROTEIN |
AT4G22930 | Predictedinteraction prediction | FSW = 0.0161
| Unknown | PYR4 (PYRIMIDIN 4) DIHYDROOROTASE/ HYDROLASE/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN CYCLIC AMIDES |
AT1G23740 | Predictedbiochemical | FSW = 0.0222
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT3G04770 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | Predictedinteraction prediction | FSW = 0.0071
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G19690 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE |
AT1G34130 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G46630 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0456
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G60790 | Predictedbiochemical | FSW = 0.0038
| Unknown | ATGCN1 TRANSPORTER |
AT5G02490 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0229
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G13980 | Predictedbiochemical | FSW = 0.0089
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0136
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G18070 | Predictedbiochemical | FSW = 0.0164
| Unknown | DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) INTRAMOLECULAR TRANSFERASE PHOSPHOTRANSFERASES / MAGNESIUM ION BINDING |
AT5G26710 | Predictedbiochemical | FSW = 0.0056
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT2G04750 | PredictedPhenotypic Enhancement | FSW = 0.0300
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT5G28060 | Predictedtwo hybrid | FSW = 0.0448
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT1G61700 | Predictedbiochemical | FSW = 0.0085
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT1G60780 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0508
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G05000 | Predictedinterologs mappingDosage Growth Defect | FSW = 0.0500
| Unknown | TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN |
AT2G29210 | Predictedbiochemical | FSW = 0.0952
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0417
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0240
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G42440 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT2G39840 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0297
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0256
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G25597 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.0160
| Unknown | UNKNOWN PROTEIN |
AT3G27000 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0603
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0217
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0275
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT2G43650 | Predictedbiochemical | FSW = 0.0087
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT3G23270 | Predictedbiochemical | FSW = 0.0437
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G17890 | Predictedbiochemical | FSW = 0.0276
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G08415 | Predictedbiochemical | FSW = 0.0169
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT5G25800 | Predictedbiochemical | FSW = 0.0077
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT5G60340 | Predictedbiochemical | FSW = 0.0136
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT1G10730 | Predictedin vitroAffinity Capture-MSin vitro | FSW = 0.0436
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G10660 | PredictedAffinity Capture-WesternProtein-peptidetwo hybridinteraction prediction | FSW = 0.0701
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
AT1G32610 | PredictedSynthetic Rescue | FSW = 0.0806
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G03050 | Predictedtwo hybrid | FSW = 0.0954
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT3G54630 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT2G35230 | Predictedinteraction prediction | FSW = 0.0345
| Unknown | VQ MOTIF-CONTAINING PROTEIN |
AT3G01090 | Predictedinteraction prediction | FSW = 0.0320
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G09020 | Predictedinteraction prediction | FSW = 0.0237
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G51965 | PredictedGene fusion method | FSW = 0.0568
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G29340 | PredictedGene fusion method | FSW = 0.1049
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454