Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G05000 - ( tyrosine specific protein phosphatase family protein )
16 Proteins interacs with AT1G05000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0501
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0137
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G79720 | Predictedsynthetic growth defect | FSW = 0.1793
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1515
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0063
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G45970 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0668
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G19120 | Predictedtwo hybridinteraction prediction | FSW = 0.0134
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G19970 | Predictedsynthetic growth defect | FSW = 0.0933
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0803
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0367
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G32850 | Predictedinterologs mappingDosage Growth Defect | FSW = 0.0500
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G19940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0242
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454