Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22880 - ( DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding )
71 Proteins interacs with AT3G22880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01630 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0685
| Unknown | BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G29350 | Experimental | FSW = 0.0263
| Unknown | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G20850 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0328
| Class D:cytosol (p = 0.67) | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G67370 | Experimental | FSW = 0.0686
| Unknown | ASY1 (ASYNAPTIC 1) DNA BINDING |
AT5G64920 | Experimental | FSW = 0.0309
| Unknown | CIP8 (COP1-INTERACTING PROTEIN 8) PROTEIN BINDING / ZINC ION BINDING |
AT5G45010 | Experimental | FSW = 0.0464
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT1G64750 | Experimental | FSW = 0.0224
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT4G29170 | Experimental | FSW = 0.0879
| Unknown | ATMND1 |
AT4G00020 | Experimentaltwo hybridtwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0677
| Unknown | PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07890 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2149
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1338
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G44610 | Predictedtwo hybrid | FSW = 0.0432
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1495
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G56350 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1269
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2135
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.1494
| Unknown | ZINC ION BINDING |
AT1G32090 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.1326
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.1191
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0803
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.1500
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1224
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G45280 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0471
| Unknown | ATRAD51C ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / RECOMBINASE/ SINGLE-STRANDED DNA BINDING |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1517
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT1G18100 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | PSF2 |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0196
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G57450 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0652
| Unknown | UNKNOWN PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.1039
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.0899
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1542
| Unknown | UNKNOWN PROTEIN |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT1G05000 | PredictedAffinity Capture-MS | FSW = 0.0803
| Unknown | TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN |
AT1G07820 | PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | HISTONE H4 |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | UNKNOWN PROTEIN |
AT1G66240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0667
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G66740 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | SGA2 |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G47760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0642
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.1538
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G21460 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0999
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G53880 | PredictedCo-purification | FSW = 0.0623
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G12090 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16290 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G47080 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G60870 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G65980 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1591
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.1073
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0701
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454