Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66240 - ( ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) metal ion binding )
39 Proteins interacs with AT1G66240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G44790 | Experimental | FSW = 0.0419
| Unknown | RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G63440 | Experimentaltwo hybrid | FSW = 0.0515
| Unknown | HMA5 (HEAVY METAL ATPASE 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G45170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1185
| Unknown | ATATG8E MICROTUBULE BINDING |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G10070 | Predictedbiochemicalbiochemical | FSW = 0.0298
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G13120 | PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | ARAC10 GTP BINDING |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G34230 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT5G26340 | PredictedAffinity Capture-Western | FSW = 0.0505
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT3G53960 | Predictedsynthetic growth defect | FSW = 0.1046
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G07180 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-WesternCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MSReconstituted ComplexPhenotypic EnhancementAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationinterologs mappingSynthetic LethalityCo-crystal Structure | FSW = 0.1910
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0397
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G24090 | PredictedAffinity Capture-Western | FSW = 0.1039
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT3G54840 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G13900 | PredictedAffinity Capture-Western | FSW = 0.0894
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G49060 | Predictedtwo hybrid | FSW = 0.1390
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G22880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0667
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10090 | Predictedinterologs mapping | FSW = 0.0650
| Unknown | UNKNOWN PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0450
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0796
| Unknown | XIF MOTOR |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G22290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0714
| Unknown | UNKNOWN PROTEIN |
AT5G41820 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0806
| Unknown | GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT-RELATED / RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT-RELATED |
AT5G65980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernsynthetic growth defectReconstituted Complex | FSW = 0.2286
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT5G66610 | PredictedSynthetic Lethality | FSW = 0.0542
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0384
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G20280 | PredictedAffinity Capture-MS | FSW = 0.1569
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454