Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66610 - ( DAR7 (DA1-RELATED PROTEIN 7) zinc ion binding )
35 Proteins interacs with AT5G66610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | Predictedsynthetic growth defect | FSW = 0.0334
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G26030 | Predictedinterologs mappingAffinity Capture-WesternReconstituted Complextwo hybridSynthetic Lethalityinterologs mappingSynthetic Rescue | FSW = 0.0527
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G03920 | Predictedtwo hybrid | FSW = 0.0070
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G10070 | PredictedSynthetic Rescuetwo hybrid | FSW = 0.0715
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT2G01630 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT3G45780 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G36640 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G47160 | PredictedSynthetic Rescue | FSW = 0.0469
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT3G53870 | PredictedColocalization | FSW = 0.0413
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G18800 | PredictedSynthetic Rescue | FSW = 0.0123
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G43900 | Predictedinterologs mappinginterologs mappingbiochemicalbiochemicalbiochemicalsynthetic growth defectinterologs mappingSynthetic Rescue | FSW = 0.0800
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G07180 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0219
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G20080 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT1G01560 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT1G10210 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0914
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G55060 | Predictedinterologs mappingPhenotypic Enhancementsynthetic growth defect | FSW = 0.1403
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G60680 | PredictedbiochemicalSynthetic Lethality | FSW = 0.0350
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66240 | PredictedSynthetic Lethality | FSW = 0.0542
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G19880 | Predictedbiochemicaltwo hybrid | FSW = 0.0325
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G22790 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G27960 | PredictedSynthetic Rescue | FSW = 0.0162
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G10960 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G41610 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | ATCHX18 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G59440 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT1G74810 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0877
| Unknown | BOR5 ANION EXCHANGER |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G60550 | Predictedsynthetic growth defect | FSW = 0.0372
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G66640 | Predictedin vitro | FSW = 0.0167
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT1G19270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0229
| Unknown | DA1 (DA 1) UBIQUITIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454