Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60550 - ( GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) kinase )
38 Proteins interacs with AT5G60550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09440 | PredictedSynthetic Lethality | FSW = 0.0484
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT1G19660 | PredictedSynthetic Rescue | FSW = 0.0223
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G13120 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSAffinity Capture-Western | FSW = 0.1704
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT3G48750 | Predictedbiochemical | FSW = 0.0140
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0044
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G53960 | Predictedsynthetic growth defect | FSW = 0.1068
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0748
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G17800 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0938
| Unknown | ARAC1 GTP BINDING |
AT2G35890 | Predictedin vitro | FSW = 0.0857
| Unknown | CPK25 ATP BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04740 | Predictedin vitro | FSW = 0.0571
| Unknown | CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19360 | Predictedin vitroin vivoin vitroin vivo | FSW = 0.0087
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G07820 | PredictedSynthetic Lethality | FSW = 0.0199
| Unknown | HISTONE H4 |
AT1G09020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0464
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G35350 | PredictedSynthetic Lethality | FSW = 0.0763
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G55060 | Predictedinterologs mappingsynthetic growth defectAffinity Capture-MS | FSW = 0.2000
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G66590 | PredictedSynthetic Lethality | FSW = 0.0675
| Unknown | COX19 FAMILY PROTEIN |
AT1G74810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.4737
| Unknown | BOR5 ANION EXCHANGER |
AT2G15910 | PredictedSynthetic Lethality | FSW = 0.0320
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0993
| Unknown | XIF MOTOR |
AT2G34250 | Predictedsynthetic growth defect | FSW = 0.0823
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G01090 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSbiochemicalbiochemicalAffinity Capture-Westernbiochemicalco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.0264
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.0843
| Unknown | UNKNOWN PROTEIN |
AT3G47300 | PredictedSynthetic Lethality | FSW = 0.2095
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT4G13020 | PredictedSynthetic Lethality | FSW = 0.0233
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1862
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.0482
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G15240 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSsynthetic growth defect | FSW = 0.0744
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G21170 | PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MS | FSW = 0.0455
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G55180 | PredictedSynthetic Lethality | FSW = 0.1391
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G32160 | Predictedsynthetic growth defect | FSW = 0.0666
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT3G61740 | Predictedco-fractionationCo-fractionation | FSW = 0.1383
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G67100 | Predictedinterologs mapping | FSW = 0.0233
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT5G66610 | Predictedsynthetic growth defect | FSW = 0.0372
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT1G47510 | Predictedtwo hybrid | FSW = 0.0355
| Unknown | 5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11) HYDROLASE/ PHOSPHATIDYLINOSITOL-345-TRISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-35-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G45240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1700
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT1G34140 | PredictedGene fusion method | FSW = 0.0504
| Unknown | PAB1 (POLY(A) BINDING PROTEIN 1) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G71840 | PredictedGene fusion method | FSW = 0.0476
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454